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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag

Basic information

species Vitis vinifera
transcript Vv04s0044g02020.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 9
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgt--gagtcagagttatattattataatg-tatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
|| || |||||||| || |||||||| ||||| || |||||||||||||| || |||||||| |||||| | ||||| |||| || || || |||||||| || | | | || || |||| ||| || ||| | ||| | | | || | ||| || |
TCTTCCATATGGGAACTCAGTTTTCTTCAGTGTCCGGAAGATTGATGATCCAATAGGACTTTTACCTGGAAGAATCATTCTGGGAATAAACAAACGAGGGgtctgatgcctaaccacat-gttgaaatgctatacgttttctgccagttt--tagctaatttctttttctgcgttaatgcag---------------------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 10
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgta----tctgtacatt--gcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
|| || |||||||| || |||||||||||||| || |||||||||||||| || ||| | | |||||| || || |||| || || || |||||||| | || || || | ||| | || | ||| |||| || | |||| || || |||
TCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctcaccatgcgatggaaacttcatattctttctgttaagtaaaactgatcttgaatttatgcatgaat-gcag--------------------------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 9
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
|| || |||||||| || |||||||| |||||||| |||||||||||||| || ||| | | |||||| || || ||||| || || || |||||||| | || | | || | | | || | ||| | || | | || | || || || | |||||||
TCTTCCATATGGGAACTCTGTTTTCTTCAGTGTTCGGAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTTTGGGGATCAACAAACGAGGGgt----ctgatctcgaccatgtaatggaagcttcatattctt--tctgctaagtaaa--actgacct--tgaatttctgcatgaatgcag----------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgca-aatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag------------
||| |||||||| ||||| |||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||||||| | | | | | | | | | | || ||||| | | ||| || |||||| | || || | | | | ||| || ||||
ACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTTTTACCTGGTCGGATAATTTTGGGAATTAATAAAAGAGGGgtatgactaaatgaaaaactagtta---aactaaacattatatagtttatcattacaattattaaagaatg--aattgtgcttttaattgtgtgccttttcttgatccattggctatag

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 14
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattatta-taatgtatctgtacattgca-aatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag--------------
||| |||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || ||||| ||||| || ||||| |||||||| ||||||| | | | | | || | || | | || ||||| | | ||| | || |||||| | || | || ||| ||||| || ||
ACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTCTTACCTGGCCGGATAATTTTGGGAATTAATAAAAGAGGGgtatgactaaacaaaaaaataactagttaaactaaacattatatagtttactattacaattattaa------aaaatgaactgtgcttttaattgtgttttttcttgatcaattggctatag

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
||| || |||||| ||| |||||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || || ||||| || || ||| |||| || | | | | || |||| | | || | || | | ||| | || || | | ||| | ||| | || || | |||| ||
ACTTCCCTATGGGTTTTCTGTTTTCTTCAATGTTCGCAAAATTGATGATCCTATTGGACTATTGCCTGGACGAATAATATTGGGAATCAACAAGAGAGGAgtaatac----taacatgattaaattttaacactata----aggtttaaaacttctttttaaaaactaat-tgtttgaattttttttcaataaattattcccag--

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatcta-ttgcaacagaacatgaatttgattgttcattctcacag
||| || |||||| ||| |||||||| | ||||||||| ||||||||||| |||||||| |||||||| || || || || || || || ||| ||||||| || | | | ||| || | | || | ||| || | ||| || | | | || || ||| | ||| || | |||| ||
ACTTCCCTATGGGTTTTCCGTTTTCTTCAATGTTCGCAAAATTGATGATCCTATTGGACTATTGCCTGGGCGAATAATATTAGGAATCAACAAGAGAGGGgtaagactaacatgatttaa-attttaagattataaggtttaaaatttctttttaaaaacgaattgtgcttttaattgaatgtttttttaataaattattcccag--