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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag

Basic information

species Vitis vinifera
transcript Vv04s0044g02020.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 9
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgt--gagtcagagttatattattataatg-tatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
 || || |||||||| || |||||||| ||||| || |||||||||||||| || |||||||| |||||| | |||||  |||| || || || ||||||||  ||  |  |   | ||  ||  |||| |||  ||    ||| | |||  |   | | || |   |||     ||   |                            
TCTTCCATATGGGAACTCAGTTTTCTTCAGTGTCCGGAAGATTGATGATCCAATAGGACTTTTACCTGGAAGAATCATTCTGGGAATAAACAAACGAGGGgtctgatgcctaaccacat-gttgaaatgctatacgttttctgccagttt--tagctaatttctttttctgcgttaatgcag---------------------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 10
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgta----tctgtacatt--gcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
 || || |||||||| || |||||||||||||| || |||||||||||||| || ||| |  | ||||||   || ||  |||| || || || ||||||||  |        ||   ||   ||  |     ||| |   ||  | |||  |||| ||  | ||||  ||  || |||                                 
TCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctcaccatgcgatggaaacttcatattctttctgttaagtaaaactgatcttgaatttatgcatgaat-gcag--------------------------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 9
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
 || || |||||||| || |||||||| |||||||| |||||||||||||| || ||| |  | ||||||   || || ||||| || || || ||||||||    | ||  |  |  ||   |  | | ||  | |||     | || |   | ||  |  || ||  || |      |||||||                    
TCTTCCATATGGGAACTCTGTTTTCTTCAGTGTTCGGAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTTTGGGGATCAACAAACGAGGGgt----ctgatctcgaccatgtaatggaagcttcatattctt--tctgctaagtaaa--actgacct--tgaatttctgcatgaatgcag----------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgca-aatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag------------
||| |||||||| ||||| |||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||  |||||||  | |  | | | |   |  | |   | ||  |||||  | | |||    ||  ||||||  |   ||   ||  |  | |  | |||  ||    ||||                 
ACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTTTTACCTGGTCGGATAATTTTGGGAATTAATAAAAGAGGGgtatgactaaatgaaaaactagtta---aactaaacattatatagtttatcattacaattattaaagaatg--aattgtgcttttaattgtgtgccttttcttgatccattggctatag

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 14
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattatta-taatgtatctgtacattgca-aatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag--------------
||| |||||||| ||||| |||||||| | ||||||||||||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||  |||||||  | |  |   | |  || | || |  | ||  |||||  | | |||  | ||  ||||||  |        ||   |   ||  ||| |||||   || ||                  
ACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTCTTACCTGGCCGGATAATTTTGGGAATTAATAAAAGAGGGgtatgactaaacaaaaaaataactagttaaactaaacattatatagtttactattacaattattaa------aaaatgaactgtgcttttaattgtgttttttcttgatcaattggctatag

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
||| || ||||||  ||| |||||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || || ||||| || || ||| |||| || |  |    | | || |||| | | || |  || |    |  ||| |   ||   ||  | | ||| |      |||  |   ||  ||   | |||| ||   
ACTTCCCTATGGGTTTTCTGTTTTCTTCAATGTTCGCAAAATTGATGATCCTATTGGACTATTGCCTGGACGAATAATATTGGGAATCAACAAGAGAGGAgtaatac----taacatgattaaattttaacactata----aggtttaaaacttctttttaaaaactaat-tgtttgaattttttttcaataaattattcccag--

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 11
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgtatctgtacattgcaaatttgatgtttgaattatagatcta-ttgcaacagaacatgaatttgattgttcattctcacag
||| || ||||||  ||| |||||||| | ||||||||| ||||||||||| |||||||| |||||||| || || || || || || || ||| ||||||| || |  |  |   |||  ||  |     | ||   |  ||| ||  | ||| ||    |  | |  ||  ||  |||  |   ||| ||   | |||| ||   
ACTTCCCTATGGGTTTTCCGTTTTCTTCAATGTTCGCAAAATTGATGATCCTATTGGACTATTGCCTGGGCGAATAATATTAGGAATCAACAAGAGAGGGgtaagactaacatgatttaa-attttaagattataaggtttaaaatttctttttaaaaacgaattgtgcttttaattgaatgtttttttaataaattattcccag--