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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01970.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaa-aatt-----tccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag
|| ||||| || || ||||| |||||||| |  ||  | ||||||| ||   |||||||||||||||| |||||||| ||||| || ||||||||||| ||||  ||||     |   || | ||  |   |     |  ||  |||  ||   ||||   | |  | || |    |||                                
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcattctcacaagtttca-aatcctatttgcag--------------------------------

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G32760.1 (Glycine max), 5'ss of exon 10
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgtt---gttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag
|| ||||||||||| ||||||||||||||||   |||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||| || ||||| |  | |   |   || | |||  ||   |     |||| | | | ||| |||  ||||      ||       ||  |   | |||  || || |        
TCGATGGCTTGTCCTCATGTAACAGGAATTGCAACCTTGGTCAAAGCTGTCCATCCTTCATGGTCTCCATCTGCTATCAAATCTGCCATCATGACCACTGgtaatacatactgatcttaata-tcattttccagaggcctata-tatataaactaaa-ctatgttagagactcttcttaatcagacaaattggaacagaaccc-----

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 10
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttcca-----agttccaaaactca--cgttgttctttatagtttttgaa----caaaaattatgaccccaac-ctcagaaaaaaactgacattacaaaaggaaaatgcag
|||||| ||||||| |||||||| |||||||   |||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||  |  | ||      ||| || | || |   ||  || || | | ||  | |      || | |||| ||  | ||  ||| | |  |  |   |||                 
TCTATGTCTTGTCCTCATGTAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgcatgtttggtttcacatcttagatgtgttttttcacatttactaagaaactaatagttattacttccacattcaaacatgatttcttatt-----------------

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G22010.1 (Glycine max), 5'ss of exon 9
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgttgttctttatag-tttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag--
|||||||||||||| ||||||||||||||||   |||| ||||||||||| ||||| ||||||||||| ||||| || |||||||| ||| |||| || ||||||         | |  | | | |  |  || |  | ||   | |  | | ||| ||  |          |||  ||   | |    |||||  ||||  | |   
TCTATGGCTTGTCCTCATGTAACAGGAATTGCAACCTTAGTCAAAGCTGTCCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCTTGACCACTGgtaaatc------atactgatattaatatcattttccagaggcctatatatataaactaaaatat--gttagagactaatcttaatcagacaaattgaaacagaactc

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G09420.1 (Glycine max), 5'ss of exon 8
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag
|||||| ||||||| ||  |||| |||||||   |||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||  |  |    |||      | ||  ||| |||  ||   ||       ||| | || ||   |                                       
TCTATGTCTTGTCCTCACATAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgagtgtttggtttcacatcttgctctgaatgtattacatgagaaattaataactatag--------------------------------------