1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGAGATTATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaaccactgctcttttcctttccaccctgttcacgcttagaatctgttcacaccttcaaactaactctgccatcttatttctgtatgcag
species | Vitis vinifera |
transcript | Vv04s0044g01290.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|26257410|gb|CA808473.1|CA808473
genomic: GGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|26257306|gb|CA808369.1|CA808369
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|26258196|gb|CA809259.1|CA809259
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|110360965|gb|EC924410.1|EC924410
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|110361379|gb|EC924846.1|EC924846
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|352769770|gb|FQ468698.1|FQ468698
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|27583422|gb|CB006117.1|CB006117
genomic: TGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCCEST: gi|110732912|gb|EE108613.1|EE108613
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
EST: TATGTGACAAAACCAGTGGGCACGATTTCGAGAGCTGCAAAGAACTCAAG GGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
genomic: TATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaacc ... ctgtatgcagGGACAGTGTGAGAACGATCACATCTTTGCCTGTATCTCCATGTTCAAGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTAGAGCTTCATTCCAACAGAACGAGTCTTACTTTATTTGATGGAGATTATGTGACAAAACCAGTGGGCACGGTTTCGAGAGCTGCAAAGAACTCAAGgtaataaaccactgctcttttcctttccaccctgttcacgcttagaatctgttcacaccttcaaactaactctgccatcttatttctgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC