Sequence
atgc intronic sequence ATGC exonic sequenceTTGAACAAAGTCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttctatagtcattttgaagtgttctcgtttctgaatccaaaactgctatttgtatgggattttgaccatgactgatactgctagtatttagctat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 10
TTGAACAAAG-TCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtact--ttctatagtcat-tttgaagtgttctcgtttc-tgaatccaaaactgctatttgtatgggattttgaccatgactgatactgctagtatttagctat--
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CTGATAAAAGCTTTGTGAAGGCTG-AAACAGAGATCTGCATAAATTATGGCAACAAAGGAAATGAGgtattactcacatagttacatatgtgcagatctagtctgactagtttataa--gcaa---gtgtgttatttttctcaag-ttgttgctcttagttttatcgtactt
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G39970.1 (Glycine max), 5'ss of exon 12
TTGAACAAAGTCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttctatagt--cat--tttgaagtgttctcgtttctgaatccaaaactgctatttgtatgggattttgaccatgactgatactgctagtatttagctat
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CTGCTCAAAGTCCCTTGCAGATTGATCAAGAAATCTACATTAGTTATGGAAACAAGGGAAATGAGgtactttatatgattccatggtttaaaataaatgaaaccgttt-tcttagtttattttttttattctagtttgcttttctgtttcatttttacctttcatt---
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G46250.1 (Glycine max), 5'ss of exon 11
TTGAACAAAGTCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttctatagt--cattttgaagtgttctcgtttctgaatccaaaactgctatttgtatgggattttgaccatgactgatactgctagtatttagctat--
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CTGCTCAAAGTCCCTTGCAGATTGATCAAGAAATCTACATTAGTTATGGAAACAAGGGAAATGAGgtactttatatttttccattgtttaaaataaatgaaaccattttcttagtt--tatttattttttattctagt--ttacttttctgttttatttttacctttcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542617|gb|CF510849.1|CF510849EST: GCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAG GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTAT
genomic: GCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttcta ... tttgatgcagGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAACAAAGTCCGTGCCACATGCAGAAAGAGATATCCATTAGTTATGGCAACAAAGGAAATGAGgtactttctatagtcattttgaagtgttctcgtttctgaatccaaaactgctatttgtatgggattttgaccatgactgatactgctagtatttagctat
- - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccaaa