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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03830.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G11490.1 (Glycine max), 5'ss of exon 10
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag
||  |   |  | || |  || |||||||| || |||||||||||||| || |||||| | ||  ||||  |||| |||||||||||||| |||||||||||||   |    |||     || |||  |  | ||| |||      ||| |  |   ||    | | ||  | ||  |    |  | || |  ||    ||||   ||||||
TTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagtta----tgaa----atgttg--atgtcttatctg-----atttgatgtgcatc----ttaaggttgatttttagtatgtatatatttaacccttgatatattgcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 10
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag
||  |  ||  | || |  || ||||||||||| ||||||||||||||  | |||||| | ||  ||||  |||| |||||||||||||| |||||||||||||   |    |||     || |||  |  | ||  |||      ||| |  | | ||    | | ||  | ||  |    || | || |  |   | ||||   ||||||
TTTCCGATTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagtta----tgaa----atgttg--atgtcttgtctg-----atttcatgtgtatc----ttaaggttgatttttagtctctatatatttagcctttgatatattgcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 10
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatttggtcaaaatttcaaatttatgatcccttgcag
||  |   |||| || |  || ||||||||||| |||||||| |||||||| ||||| |||||  ||||  |||| |||||||||||||| || || ||||||        |   || | ||||||  |  ||||| |    |   |||    | ||   |||    |  |  ||| | | ||| |  |  | ||  |    |   | ||||
TTTCCGGCTGCTAGGTCGTGTTATGGCTAAAGCTCTTCAAGACGGACGACTTTTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCGGCCAAgta--------tgttgtgcaatattg--atgttttaaccattttcatttgtattgttaatctgatg-gtcaatttcttctagtctatgtacctaaccttcactttgtggcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA04G00530.1 (Glycine max), 5'ss of exon 10
TTATCACTTGCTTGGACAAGTGATGGCTAAAGCGCTTCAAGATGGACGACTCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaatttgagttctatattgtcaaattttacctgcctctgtttaacatatttccctgtcatgggaggttcatt-tggtcaaaatttcaaatttatgatcccttgcag
||  |   | || || |  || ||||||||||| |||||||| ||||||||  |||| |||||  ||||  |||| |||||||||||||| ||  | ||||||        |   || | ||||||  |  ||||| |    |   |||   || | |   | | ||||    || ||| | |||||     | ||  |    |   | ||||
TTTCCGGCTACTAGGTCGTGTTATGGCTAAAGCTCTTCAAGACGGACGACTACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAgta--------tgttgtgcaatattg--atgttttaaccattttcattttttat-tgttaatctgatggtcaatttattctagtcaatgaacctaaccttcactttgtggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717510|gb|FC067870.1|FC067870
EST:     TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAA                         GATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
genomic: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaa ... tcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
EST: gi|110686202|gb|EE063591.1|EE063591
EST:     TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAA                         GATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT
genomic: TCTTGGATCTGCCGCTGTCTATGGCTTTTTATAAGCTTGTGCTTGGTCAAgtaatacaaa ... tcccttgcagGATCTGGATTTGCATGACATCCTATCATTTGATGCTGAACTTGGGAAGATT