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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02970.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 10
AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcag
 ||||| ||||| ||||||| ||| |||||||||||||||||||| || ||||| || |||||||||  ||||||| |||||||| |||||||||| |||||      || ||   |   |||   | |    |  ||| |||  | |||||      |  |  |    || ||  || || ||   |||  || |||| |||
TATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATATTATTTGATGGACAGgt------ttgtaacttacatcatgcttt----tgtttctata-caatgtgccacagcacaactgataatggaaactcccacatgtctgt--tgtattttcag

upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 10
AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcag
 ||||| ||||| ||||||  ||| ||||||||||||||||||||||||||||| || |||||||||  ||||||| |||||||  |||||||||| |||||      || ||   |   |||   | |    |  ||| |||  || ||| | | |  | ||  ||     ||  ||  | ||   ||| ||  |||| |||
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgt------ttgtaacttacatcatgcttt----tgtttctata-catagtg-acacaactgataata----gaaactcctacatgtctgtttt--attttcag

upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcag
 ||||| ||||| ||||||||||| |||   |||||| |||||||||||||||| ||||| ||||||  ||||||||||||||| || ||||||||  |||||      |  ||    |    |  ||||| || | |   ||   || |   |||  |  |   ||| |     |   |||                     
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactc-atcaacta--gagttatatgttccattcgta-cgttttctttattcacaactctaccttt---tctgcag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110716734|gb|EE091976.1|EE091976
EST:     ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGACAG                         ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
genomic: ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactccttt ... ggatttgcagACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
EST: gi|110698037|gb|EE075591.1|EE075591
EST:     ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGACAG                         ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
genomic: ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactccttt ... ggatttgcagACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
EST: gi|30330416|gb|CD013678.1|CD013678
EST:     ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGACAG                         ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
genomic: ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactccttt ... ggatttgcagACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
EST: gi|30329939|gb|CD013201.1|CD013201
EST:     ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGACAG                         ACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA
genomic: ACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactccttt ... ggatttgcagACTCATAAAATCAAGAAATTTGTCTTGCACACAAACTATCCTGGGCATGCA