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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATGgtagaatggtttgtcttgaaattctggtttcggttttatcatattgttctctgaatctttggagttgtgcaggcctaggaacctatttccttttattttaactggagatctcatgtgctgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g01860.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G06280.1 (Glycine max), 5'ss of exon 10
AGATCTGTGGCATCAACAGGCAAGAGAACTACCATCCAGTTTTCAGATCTCAAACGGAAAAGATATTGGTTTCCTTTGATGgtagaatggtttgtcttg--aaattctggtttcggttttatcatattgttctctgaatc-tttggagttgtgcaggcctaggaacctatttccttttattttaactggagatctcatgtgctgcag
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AGATCTGTGGCTTCAACGGGAAAAAGAGCTACAATCCGATTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCCTTAATGgtataatatgacactgtagtaagttttgattttg--taaaccctctctttccaagcacgacttattgtcatttat-ccaaaaggtcaagcattatttgct--aactgaggcctgcag---------