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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGTCCAAATGCAGCTATCATTCATTATTCTCCAGATGCAGAAACATGTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaactatcttgaattgtttgggatatagccattaaccaaagaaggcaatacaataagtccattttttgtattaactttgtgtttatgatattgctattctttactgatgatatggtgtctttgaag

Basic information

species Vitis vinifera
transcript Vv04s0023g01300.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G06900.1 (Glycine max), 5'ss of exon 10
GGTTGGTCCAAATGCAGCTATCATTCATTATTCTCCAGATGCAGAAACATGTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaactatcttgaattgtttgggatatagccattaaccaaagaaggcaatacaataagtccattttttgtattaactttgtgtttatgatatt-gctattctttactgatgat--atggtgtctttgaag
 ||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||||  | ||||| || |  |||||||| |||||||||||||| ||||| || | |  || || ||  ||||     || | | || |           |||  | || ||   |||  |||      ||||  || ||||  ||  |   | | || |||  |    |||||||| |||||
AGTTGGCCCAAATGCAGCTATAATTCATTATTCTCCAAAGGCAGAAACATGTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtcta--atttttaacagtttacagcattgacttttat----------aatgaattatgttgttttcatgt------tttgcattcatgaccttcacctctgtatattgacaactggtggtgtctctgaag

upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G38410.3 (Glycine max), 5'ss of exon 10
GGTTGGTCCAAATGCAGCTATCATTCATTATTCTCCAGATGCAGAAACATGTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaactatcttgaattgtttgggatatagccattaaccaaagaaggcaatacaataagtccattttttgtattaactttgtgtttatgatattgctattctttactgatgatatggtgtctttgaag
 |||||  ||||||||||||| ||||| |||| |||| | |||||||||||| ||||  | ||||| || |  |||||||| |||||||||||||| ||||| || | |   | || || |||||     |||| |||              | |  | || ||   |||  |||      ||||  || ||||| |   ||||    |||| ||     |||||| |||||
AGTTGGCTCAAATGCAGCTATAATTCACTATTTTCCAAAGGCAGAAACATGTGCTGAACTTGATCCAGACAAAATTTATCTTTTTGATTCTGGAGCCCAGgtctgtcta--gtttttaactgttttcagcatagacat------------atagtgaattatgttgttttcatgt-----ttttgcattcatgatctctatattgacaactggtg-----gtgtctctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726497|gb|EE102329.1|EE102329
EST:     GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAG                         TATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
genomic: GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaac ... gtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
EST: gi|110694334|gb|EE071348.1|EE071348
EST:     GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAG                         TATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
genomic: GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaac ... gtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
EST: gi|110700420|gb|EE078440.1|EE078440
EST:     GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAG                         TATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
genomic: GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaac ... gtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
EST: gi|30299030|gb|CB975824.1|CB975824
EST:     GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAG                         TATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
genomic: GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaac ... gtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
EST: gi|110712732|gb|EE088034.1|EE088034
EST:     GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAG                         TATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT
genomic: GTTCTGAGTTAGATCCCGATAGCATTTATCTATTTGATTCTGGAGCGCAGgtttgccaac ... gtctttgaagTATCAAGATGGAACAACTGATATAACTCGAACTGTTCATTTTGGAAAACCT