Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaatccaaaggcgggacaatataactttatattctgcaaaagctagttctatttatttgatctatatccagtatgaatatgtgaagtattct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 6
TTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaatccaaaggcgggacaatataactttatattctgcaaaagctagttctattta--tttgatctatatccagtatgaatatgtgaagtattct------
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TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgct-tacagatttataatc------aatttattgtgcttgactttgatcaatggtttcaataaattt-tgatgtgcattacaaat
upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 5
TTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaatccaaaggcgggacaatataactttatattctgcaaaagctagttctattta--tttgatctatatccagtatgaatatgtgaagtattct------
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TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCGTCATCCAAGATGTGATGTTTGCAAGAACTTTgtaagtactagcagccagtttttgct-tacagatttataatc------aatttattgtgcttgactttgatcaatggtttcaataaattt-tgatgtgcattacaaat
upper sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G06650.1 (Glycine max), 5'ss of exon 3
TTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaat-ccaaaggcgggacaat-ataactttatattctgcaaaagctagttctatttatttgatctatatccagta-tgaatatgtgaagtattct
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TTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTgtaagtatcttcaccagttgtttttcactcacagttgtctattagccttggtttggttgtggggaaggaagtactattcaacagcaaattttcaaaaaat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110731744|gb|EE106423.1|EE106423EST: CATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTT ATTCCATCAAATGCAGCTGGAGAAACAGAGTATAGAGCACATCCTTTCTGG
genomic: CATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtca ... ttttgtacagATTCCATCAAATGCAGCTGGAGAAACAGAGTATAGAGCACATCCTTTCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCTGTGTCTGGAAATCGCCCATATCATGAATCATGCTACAAGGATCAAAATCATCCAAGATGTAACGTTTGCAAGAACTTTgtaagtgtcaatccaaaggcgggacaatataactttatattctgcaaaagctagttctatttatttgatctatatccagtatgaatatgtgaagtattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaag