Sequence
atgc intronic sequence ATGC exonic sequenceTGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggttgtcccgtgggttctatttcatattggcattagtacaaaaaggataattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g39300.1 (Oryza sativa), 5'ss of exon 10
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggttgtcccgtgggttctatttca-tattggcattagtacaaaaaggataattt--
|||||| || || ||||||||||||||||| || |||||| |||| ||||||| || ||||| ||| | | || || ||||| || | | | ||| | | | || | || || ||| | | ||| | || || | ||| | | | |
TGACCGGCGTTTGGCAGATCATTTTGGAGGGAAACTTCATATGGGTTATATGCTGATACGTGAGAAGTTATCCGAACTGCAGgtgaggtttttcgaaattgtgctatttt--gaatggagctaagtcc-ggtggggttgcatgttagacaagggcctttttatgggaacagtaggattgtcctac
upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G028096_T03 (Zea mays), 5'ss of exon 11
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatga-attattttcgtgatcatata---ggagctcatt---tatgttttg-gttgtcccgtgggttctatttcatattgg---cattagtacaaaaagg----ataattt--------------------------
|||||||||||| ||||||||||||||||| || |||||| |||| ||||||| || ||||| | || | || || ||||| | | | | |||||| | | | | || | | | | |||| | | ||| ||| | |||| || | | | | || || |
TGACCGTCGCTTGGCAGATCATTTTGGAGGGAAACTTCATATGGGTTATATGCTTATACGTGAGAGATTGTCTGAACTGCAGgtttgtttttgtaaaccatgtgatcttctgaatgaaacttactggatttcttttacagagcttgatcagttttatcactgcttggttgtttttatgtgagagtgtgccatgatcttgtttctgttccttttgtatgtacag
upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G38430.1 (Glycine max), 5'ss of exon 10
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggttgtcccgtgggttctatt-tcatattggcattagtacaaaaaggataattt
||| || || ||||| |||||||||||||| || |||||||| || |||||||| || ||||| ||| | || || ||||| |||||| || | | | | | | ||| ||| | | | || ||||| | || | | | || || |
TGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATGCAGATTCGTGAGAAGTTAGCCGAACTTCAAgtaagacatctttaatgcatttctgatcttgtgtgtacttaccattttgatttgatgtttgttctggcattgaatgtaagtcattgcatttcttatctat-
upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G17440.1 (Arabidopsis thaliana), 5'ss of exon 10
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggt-tgtcccgtg-ggttctatttcatattggcattagtacaaaaaggataattt
||| ||||| ||||| |||||||||||||| |||||||| ||||| || |||| ||||| || || |||||||||||||||||| || | || || | || | | ||| | | ||| | | | || ||| |||| | || | | |
TGATCGTCGGTTAGCTGATCATTTTGGAGGGAAGCTTCACTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGgtaatatacagtagaatctt--tctagtgattttccttttctctcttgatatagactgtatagttatattctct-ctgtcttcttcag--------------
upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S402_41V6.1 (Physcomitrella patens), 5'ss of exon 10
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggttgtcccgtgggttctatttcatattggcattagtacaaaaaggataattt---------
|||||||||||| || || ||||||||||| ||||| |||||||| |||||||| || ||||| ||||| | || | | |||| | |||||| || | || | ||| | || | | || |||| | ||| | | ||||| |||| || |
TGACCGTCGCTTGGCGGACCATTTTGGAGGGAAGCTGCATTTGGGTTATATGCAGATTCGTGAGAAGCTCGTTGACTTGCGGgtacgc--gcttatttctactttc---caagattttgttttcaaaagcatggtaaagcgcgtg-tattgc---ctggtagtgccacaaataggaatatctaagtggtggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110702229|gb|EE080705.1|EE080705EST: AGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAG GAGGAGAGAAACAAGAGCCGCAAGGTTGATAGACATGAGAATGATAGAAG
genomic: AGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaa ... aatttttcagGAGGAGAGAAACAAGAGCCGCAAGGTTGATAGACATGAGAATGATAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACCGTCGCTTAGCAGATCATTTTGGAGGAAAGCTTCATTTGGGCTATATGCAAATCCGTGAAAAGCTGGCAGAGCTTCAGgtaagatgaattattttcgtgatcatataggagctcatttatgttttggttgtcccgtgggttctatttcatattggcattagtacaaaaaggataattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa