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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaatctctagtctcttttatatacttgacagttccttatcttttttctcctttttctgttgtcctggttatgtgtgaattaatattttgactag...

Basic information

species Vitis vinifera
transcript Vv04s0008g03770.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03770.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S132_95V6.1 (Physcomitrella patens), 5'ss of exon 11
GGATATGTACAATGAATGGACTGTTGAGTTGAAGGCAATGGCAGATCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaatctctagtctcttttatatacttgacagttccttatcttttttctcctttttctgttgtcctggttatgtgtgaattaatattttgactag------------
|  | | | | | |||||||| || ||||||||||  ||||||||||| ||||| |||||||| || || |||| ||| ||| | |  ||  |||||         | | ||   | || ||   |  |   |  ||| ||| ||||     ||||   |||| |   |  |       ||  ||       |              
GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATTATTAGCATGCGTCAACAGCTCTATGACGCTCTGCAAGCTCGAGgtg--------tgtggttcttcttgtactatccatgatatcttgtctcttttg----ttttgaattgttcaaatagttcacattttgttacccctgtttctttctttctgtc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399226|gb|EC965723.1|EC965723
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|110404843|gb|EC970367.1|EC970367
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|30306097|gb|CB982891.1|CB982891
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|30131422|gb|CB916761.1|CB916761
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|45770794|gb|CN006646.1|CN006646
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|352776804|gb|FQ472691.1|FQ472691
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|110388301|gb|EC953036.1|EC953036
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|110372200|gb|EC936351.1|EC936351
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|33402663|gb|CF208290.1|CF208290
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|30306178|gb|CB982972.1|CB982972
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
EST: gi|29783123|gb|CB349091.2|CB349091
EST:     TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAG                         GCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT
genomic: TCGTATTATCAGCATGCGCCAGCAACTCTTTGATGCTTTACGGGCCAGAGgtaaaccaat ... tgtttggcagGCACACCAGGTGACTGGAATCACATTCTCAAGCAGATTGGAATGTTTACTT