1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACCCTCTCATAGATGCTAATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGgtaaatctaaatttggacacgtcccttccaaatatgtaggttttctgtgttggtaccatatttttgagtcctaatcttgtttcatcaacctaacagaaattatgatattattctccaagaaatcaataatatgcatgaagaagtcttgaacaattgatatatatttatacag
species | Vitis vinifera |
transcript | Vv04s0008g02670.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAG ATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGAEST: gi|77586218|gb|DV222205.1|DV222205
genomic: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGgtaaatctaa ... atttatacagATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGA
EST: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAG ATTGTATGCTCTTTTCTCGTTCGAGACATGGGEST: gi|110389719|gb|EC954579.1|EC954579
genomic: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGgtaaatctaa ... atttatacagATTGTATGCTCTTTTCTCGTTCGAGACATGGG
EST: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAG ATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGA
genomic: ATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGgtaaatctaa ... atttatacagATTGTATGCTCTTTTCTCGTTCGAGACATGGGCATTGACTGGCGTATGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCCTCTCATAGATGCTAATATGAAGGAACTGTCAGCCACAGGGTTCATGTCAAACCGAGGAAGGCAGgtaaatctaaatttggacacgtcccttccaaatatgtaggttttctgtgttggtaccatatttttgagtcctaatcttgtttcatcaacctaacagaaattatgatattattctccaagaaatcaataatatgcatgaagaagtcttgaacaattgatatatatttatacag
- - - - - - - - - - - - AAGGAA