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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGgtgatttcacttcttcatgaagcttcctttttttttggtgctttgatttgaatggagttattttgggctttattgtcaaataatatgaactatttaattattatcattatttaaatcttgatcag

Basic information

species Vitis vinifera
transcript Vv04s0008g00840.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 10
TTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGgtgatttcacttcttcatgaagcttcctttttttttggtgctttgatttgaatggagttattttgggctttattgtcaaataatatgaactatttaattattatcattatttaaatcttgatcag
|| ||||| ||||| ||||| || |  ||||| ||||||||||||||||||||  ||||||||||||||||||  |  | |   |   | | |  |     | |   || |  ||  ||     |  || |   |  || ||| |||  |  |                                         
TTATGGGATATAAACATGGATTCAGGCCCAGTTGCAACTTTCCAAGTTCATGAATATTTAAGACCTAAGgtgaagtttcgtaacctgaatgatggcaaaaatgtcaatgttaagacatgtcacaatctaatgccgtgttaatt-tcatcttttgcag-------------------------------------

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 10
TTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGgtgatttcacttcttcatgaagcttcctttttttttggtgctttgatttgaatggagttattttgggctttattgtcaaataatatgaactatttaattattatcattatttaaatcttgatcag
 | |||||  |||| ||| | || |  || ||  |||| |||||||| ||||| |||||||||||||||||||               ||   | || |    |   |  ||  |    || | || |||||   |    |  || |  |||| | |   || | | || | |||                   
CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtga---------------aa---ttctctcaactgaataattaaa----aaggaagctatttgatgaacaaaagtaatgtaatttta-tgatatcactactttcag------------------