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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttcaatccttcatcccttttatattccactgactcccccttttctccaccttattctacttgctccaaatgttaaaatcacag

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 11
GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaa-acttcaatccttcatcccttttatattccactgactcccccttttctccaccttatt-----ctacttgctcc--aaatgttaaaatcacag------
||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||| | |  | | | |||  |  ||| | |    || |   |   | || |   |    ||||     |   ||  | |  | ||||   ||| |         
GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G29410.2 (Glycine max), 5'ss of exon 9
---------------------------GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaa-acttcaatccttcatcccttttatattccactgactcccccttttctccaccttatt-----ctacttgctcc--aaatgttaaaatcacag------
                           ||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||| | |  | | | |||  |  ||| | |    || |   |   | || |   |    ||||     |   ||  | |  | ||||   ||| |         
CATATTAATTAACAACACATCCTTTAGGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 7
GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttcaatccttcatcccttttatattccactgactcccccttttctccaccttattctacttgctccaaatgttaa-----aatcacag----------------------------------------------
||| ||||||| ||||||| |||||| |||||||||||||| || || ||||||||||| ||||||||||||||| |  | | ||  ||  |   ||||   |  || |||   ||  || | |     ||  | | |||       |  || |     | |||| |                                              
GGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCCTCCATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcctattgttttttttttttggttagcagtgagatcctattgtttttctgtttgtgtgcttcagtttgacatttatacttattcaccgtgatattttttgccccattgttactgacatgtgctaattataaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG                         GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG                         GCGACAAGAGTGCCCTGGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG                         GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG                         GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTG                         GCGACAAGAGTGCCCTGGTGCCTGGTGGTATTCGCATTGGATCACCTGCTA
genomic: GAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaaacttca ... aaaatcacagGCGACAAGAGTGCCCTCGTGCCTGGTGGCATTCGCATCGGATCACCTGCGA