Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCTCATATTATTTGCAGTGGGTGACCATGCTTCAGTTAATAAAACTCTAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATgtaagtttgtatcccaccttctactttgaaatgtgtatacgacacagttttttgccctgtgtctgacattacttgcttttccctctctgatatatag

Basic information

species Vitis vinifera
transcript Vv03s0088g00500.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0088g00500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G04870.1 (Glycine max), 5'ss of exon 10
TGATCTCATATTATTTGCAGTGGGTGACCATGCTTCAGTTAATAAAACTCTAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATgtaagtttgtatcccaccttctactttgaaatgt-gtatacgacacagttttttgccctgtgtctgacattacttgcttttccctctctgatatatag
 ||||| || ||||||||||||||| | || || || || ||||||||| ||||| | ||||| || | | ||||||| || || ||||||||||| |||||||||| ||        || | |  || |      |   |           |    || | ||| | |||| ||| || |     ||   | | |||
CGATCTGATTTTATTTGCAGTGGGTCATCACGCGTCTGTAAATAAAACTTTAGACCGTCTTAGAGTTTATGTAGCCCATGACCTAGGTTTGGTTGACCATgtaagttagtgattggttttatgcagtggatcaccatgctctctttctcaactatttctttttctaatattatttggttattttgttcgagttt-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351048178|gb|FQ442148.1|FQ442148
EST:     TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCAT                         TCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCGATGTTTGAGTGGAAC
genomic: TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATgtaagtttgt ... tgatatatagTCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAAC
EST: gi|352786206|gb|FQ478817.1|FQ478817
EST:     TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCAT                         TCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCGATGTTTGAGTGGAAC
genomic: TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATgtaagtttgt ... tgatatatagTCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAAC
EST: gi|351046227|gb|FQ442605.1|FQ442605
EST:     TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCAT                         TCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCGATGTTTGAGTGGAAC
genomic: TAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATgtaagtttgt ... tgatatatagTCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAAC