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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagt--ggtgagaatttctcattatagtggcact--acactcactgaacctgattttcacag---------------
||||||||||||||||| || || ||||| || ||||| |||||||||||| |    || |||||||| ||||| || ||| |||| ||||| |||||||||||        |   |   | ||||| || |   ||   |  |   ||  | |       |    | ||  | ||| || |    | |                
ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaa-----gtgactgtttttgttgatttatttcagttttatatcaccaccacaactatcttgagtattctataaacatgttgcgtataagatttttcctgaagt

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcatta-tagtggcactacactcactgaacctgattttcacag-------------
||||||||||||||||| || || ||||| |||||||| |||||||||||| | |  || |||||||| ||||| || ||| | || ||||| |||||||||||          | |   |||   | |  |  |   | | | | |     ||    | |  | |   |  | |||  |  |  ||             
ATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGGTCCATTACCCAAATTCCTATTCTGACAATGCCTAATGATGgtaagtaaccatggcttttttatctttgttattatataactatatgaagggcagacctagtgtagtggttagagctgtctcactgagtcaccaggccatg

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G094497_T03 (Zea mays), 5'ss of exon 1
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactc---actgaacctgatttt-cacag-------------
|||||||||||| |||| || || ||||| |||||||| |||||||||||| | |  || |||||||| || || || ||| |||| ||||| || ||||||||    || |||  ||  | || ||||     | | ||||   | ||||| |   ||||    |   | ||    || ||||  |||              
ATGTATACTGATTTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAGGAAGAACAGGCTCCATTACCCAGATTCCTATTCTAACAATGCCTAACGATGgtaag--taaccat-gtcttttttaatctttatattataattatactttataattatactatgtgccgtattgttattggttttgtacacttatcttctgaac

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 11
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag
|||||||| ||||| || || ||||||||||| |||||  | ||||| || || || || || ||||||||||| |||||| |||| |||||||||||||||||||  |   |  |   | ||        | |    |   | | |  |  |    | || | |   ||||| |    |  ||||
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatagaagtta-atcagctatcttgcataatggttttaacactgaatgattatattt--tgaactt---ctgtacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G42940.3 (Glycine max), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatca-tccat-attgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag
|||||||| ||||| || || ||||||||||| |||||  | ||||| || || || || || ||||||||||| |||||| |||| |||||||||||||||||||  |   |  | | ||| |   |||| |   |||   ||||| |  |  |    | || | |   ||||| |    |  ||||
ATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaatatacaagttcatcagctatcttgca-tgatggtttcttaacactgaatgattatattt--tgaactt---ctgtacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttc---acag
|||||||| ||||| || || || || |||||||||||| | ||||| || || || || || ||||||||||| |||||| |||| ||||| ||||||||| |||  ||  || ||  |   | |||   |     | ||    || | |     |       |   |   | |||  |||   ||||
ATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGgtgatg--aaatattattgaatcttatcagctatcatgcataatgcactctcaattctgactgattgtttttcttgaacttctgtacag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttc---acag-
 ||||||| ||||| || || || || |||||||||||| | ||||| || || || || || ||||||||||| |||||| |||| ||||| ||||||||| |||  ||  || ||  |   | |||   |     | |||   || | |     |       | | |   | |||  |||   |||| 
-TGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCTAATGATGGtgatg--aaatattattgaatcttatcagctatcatgcattatgcactctcaattctgactgattatttttcttgaacttctgtacaga

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 9
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgt-aatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag-------------------------------------------------------------------------------
||||||||||||||||| || |||||||||||||||||||| || ||||| || || || || ||||| || || || ||| |||||||||| ||||||||| | |  ||  | || |   |  | |  |    ||      ||    | | |  |||| |  |||   | |   | |||||  |                                                                                 
ATGTATACTGATCTGGCCACCATTTATGAACGTGCTGGACGAATCGAAGGCCGTAAAGGATCTATTACTCAGATTCCTATTCTAACTATGCCGAATGATGgtcagttgcatccttcctttgtcatcaagtttcagtatttgctttctttgaaatgggcattttactttgtta-tattatttttgctctttcttgactgcgtgcagtcttcgactgtggacttctccttgtctgtactaagcttcacctttgtggcatttcgtgcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 10
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatc-catattgatctagtggtgagaatttctcattatagtggcactacactca-ctgaacctgatt-ttcacag---------------------------------------------------------------------------------------------------
||||| || ||||| || || |||||||||||||||||||||||||| || || || || || ||||| || ||||||||||||||||||||||| || |||||| | |  |   | | | |  |||  |  || | ||| |  | |     | | ||  | |  | |  |     |||    | |||                                                                                                    
ATGTACACCGATCTTGCCACCATTTATGAACGTGCTGGACGTATTGAGGGCCGTAAAGGATCTATTACTCAGATCCCAATTTTAACTATGCCCAACGACGgtaattttagcctcaaactcttgctgaatttttg-taagattagcgctgccgattagcttttcctttagttctttttgaccgcttacaagtgccagtcgccctactattttctttctgcatgaatgcctttcttttgagcctctaatcttcttctttttaatctcttttgtccctacgttctccgcag

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 9
ATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAGGACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacag
|||||||| ||| |||| || ||||| || ||||||||||| ||||||||||| | ||| || || || ||||| || ||| | | |||||| || |||||||  |  | |  | ||| ||   ||||   |  |||     || ||                                       
ATGTATACAGATTTGGCAACAATTTACGAGCGTGCTGGACGAATTGAAGGACGAATGGGATCAATCACTCAAATTCCCATTCTCAGTATGCCAAACGATGgta-cgagatgtctgatc-atcgagatcatctactgacttactcgcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362645|gb|EC926192.1|EC926192
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110357509|gb|EC921103.1|EC921103
EST:     CGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: CGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110720101|gb|EE095728.1|EE095728
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110719306|gb|EE097131.1|EE097131
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110712807|gb|EE088186.1|EE088186
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|30251466|gb|CB969199.1|CB969199
EST:     TTTT-ACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: TTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110690712|gb|EE068109.1|EE068109
EST:     CAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: CAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110723346|gb|EE100552.1|EE100552
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|34542515|gb|CF510747.1|CF510747
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|349813104|gb|FQ411344.1|FQ411344
EST:     CCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: CCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110414446|gb|EC980278.1|EC980278
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110705729|gb|EE082911.1|EE082911
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110687127|gb|EE064266.1|EE064266
EST:     CTATGCCTAATGATG                         ATATAACACATCCCACTCCTGATCTCACGGGTTATATCACTGAGGGTCAGA
genomic: CTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|27755418|gb|CB036173.1|CB036173
EST:     GCGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATG                         ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA
genomic: ACGGAAGGGTTCCATTACACAAATCCCAATTTTAACTATGCCCAATGATGgtaatgtcaa ... attttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGA