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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcctttaataccta...

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G011912_T01 (Zea mays), 5'ss of exon 6
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcctttaataccta--------
|||||||||  | |||||  | ||||||  |||||||||| || | |||||  | || || ||||||||||||||||||||  |||| ||||| |||||||||   || | | |||   |  | |||||    ||      ||||||||  | || |   |  | || |  |   |   || |    | |  |||| |          
ATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTGGAATTTTAGAGGGAACAATGACCAGACAACCTTTTCTCTGCCCACTGGATCATGTGTTTGAGgtaa--ttctgtaagt---atttccttttata-acggaggctattgtttttctataaaa-aactgatatccatact-gccacctcagcttcaaataacaggtcacttc

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 8
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaa-gtttagcatcatctcctttaataccta--
|||||||||| | ||||||||||||||||| |||||||| ||| | || |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| | |  |||     |   || ||   |  | | | ||||||||| ||  ||    ||| ||   ||||  | | |  | || |      |||    |  
ATGGTGCAGAATTGATAGGTTATGGTTTCCCCATCCTGGTGTTTTGGACGGGTCTATAACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGgtacttctagtttgaccaag--tagttcc-caaattgttattattgttcacttattctttagatcgactggattgatgaataacagccttagaaattttgatg

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 10
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcctttaataccta-
|||||||||| | |||||| |||||||||| |||||||| ||| | || |||||||| |||||||||||||||||||| |||||||| ||||| |||||||||  | |  |||  |  |        |    |  | | ||| ||||| ||  ||    ||| |    ||||    |   || |   ||||  | |  |  
ATGGTGCAGAATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTAGACGGGTCTATGACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTCTTTGAGgtatttctagtttgatcaagtagttcctaaattgttattattgttgttcacttattctttagattgactggattgatga-ataacagccttagaaattttg

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 10
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcct----ttaataccta------------
|||||||||  | |||||| |||||| | | ||||||||  || | || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||       |||| | |         || | || | |  |||||||| |   || |  | | |||| ||||| |  |  || |  |  |    || ||||||             
ATGGTGCAGGATTGATAGGCTATGGTATGCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCATGTATTTGAGgta-------tttaatgg---------ttccttattatttttattgttcatttatcaattggatcatttggaactggaagattaattaatcatattgatacctttgggtctaagta

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 9
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaagtttagcatcatctcct----ttaataccta-----------
|||||||||  | |||||| |||||| ||| ||||||||  || | || ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||       ||||  |||        || | || | |  |||||||| |   || |  | | |||| ||||| |  |   | |  |  |    || ||||||            
ATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGGACCACGTATTTGAGgta-------tttaagtga--------ttccttattatttttattgttcatttatcaattggatcatttggaactggaaggttaaataatcatattgatacctttgggtccaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56688584|gb|CX126487.1|CX126487
EST:     GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAG                         GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
genomic: GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttt ... tgaaatgtagGTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
EST: gi|110360771|gb|EC924133.1|EC924133
EST:     GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAG                         GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
genomic: GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttt ... tgaaatgtagGTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
EST: gi|56688689|gb|CX126592.1|CX126592
EST:     GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAG                         GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
genomic: GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttt ... tgaaatgtagGTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
EST: gi|56688204|gb|CX126107.1|CX126107
EST:     GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAG                         GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
genomic: GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttt ... tgaaatgtagGTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
EST: gi|56688359|gb|CX126262.1|CX126262
EST:     GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAG                         GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC
genomic: GGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttt ... tgaaatgtagGTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATC