Sequence
atgc intronic sequence ATGC exonic sequenceGACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcatttctccatagactattatcgactattatctgttttaaagaaacatttttatgaggcttggccctgtcatatcactggccttcaaagtagttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G32190.1 (Glycine max), 5'ss of exon 5
GACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcatttctccatagactattatcgactattatctgttttaaagaaacatttttatgaggcttggccctgtcatatcactggccttcaaagtagttc
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AACAGGTACTCTCACAATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGgtaggcattctattattgagtttcgcatgcttataaagttattcatgaataattgtgaataaattt-----cgttgtataattggctatgtcag------
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G01680.1 (Glycine max), 5'ss of exon 6
GACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcatttctccatagactattat-cgactattatctgttttaaagaaacatttttatgaggcttggccctgtcatatcactggccttcaaagtagttc
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AACAGGTACTCTCACAATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGgtaggcattctattattgagtttcacatgcttatcaa--gttattcatgaataattgtgaataactt----tcgttgtataattggctatgtcag------
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 5'ss of exon 4
GACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcatttctccatagactattatcgactattatctgttttaaagaaacatttttatgaggcttggccctgtcatatc-actggccttcaaagtagttc
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GACAGGAACTCTCACGATGGGGAAGCCCGTTGTTGTGAAAACAAAGCTCCTGAAAAACATGGTACTTCGAGAGTTCTATGAACTTGTTGCTGCAACTGAGgtaaactttt----ggaaactcctggcctacatca--------aaagtaatattactatg----ttgatgctattttgtttatcag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728350|gb|EE103842.1|EE103842EST: TGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAG GTGAACAGTGAGCACCCACTGGCAAAGGCCATTGTGGAGTATGCTAAGAAA
genomic: GGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcattt ... tgtgtaccagGTGAACAGTGAGCACCCACTGGCTAAGGCCATTGTGGAGTATGCTAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACAGGGACCCTCACAGTTGGGAAGCCTGTAGTTGTTAACACAAGGCTCTGGAAAAATATGGTACTCCAAGAATTCTATGAACTTGTTGCGGCCACTGAGgtaggcatttctccatagactattatcgactattatctgttttaaagaaacatttttatgaggcttggccctgtcatatcactggccttcaaagtagttc
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