1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAAACGAGCAGTCTCTCCAAATTATTTTCCACTTATCCGTTCTGGATCTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGgtaagcaaggaaaaccagagaatgttgaatgactacactgcatacacttgctatcaaattattgctgaacccatccacatattaattactaaaattttctcatacatcctcag
species | Vitis vinifera |
transcript | Vv02s0025g02020.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGG ACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTCCCGAAAGAGAGEST: gi|110425842|gb|EC992235.1|EC992235
genomic: CTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGgtaagcaagg ... acatcctcagACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGAG
EST: CTGTAGCTAGCAGATCAATCTCTCCAAACTCTTCTAAAGCTAAGCTACGG AACTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGACEST: gi|110404678|gb|EC970112.1|EC970112
genomic: CTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGgtaagcaagg ... acatcctcagACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGAG
EST: TAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGG ACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGAG
genomic: TAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGgtaagcaagg ... acatcctcagACCTCATCAGAGCCTCGATCAGCTTCATTGTTCACCCGTACCGAAAGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAACGAGCAGTCTCTCCAAATTATTTTCCACTTATCCGTTCTGGATCTGTAGCTAGCAGATCAACCTCTCCAAACTCTTCTAAAGCTAAGCTACGGgtaagcaaggaaaaccagagaatgttgaatgactacactgcatacacttgctatcaaattattgctgaacccatccacatattaattactaaaattttctcatacatcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA