Sequence
atgc intronic sequence ATGC exonic sequenceGGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g46750.4 (Oryza sativa), 5'ss of exon 7
GGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagctaatgcattttttttcttctcctcgaatc--agtgttcaatatagtaattggtcatttgcc--ccaatttcag
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CGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGATTTTGGCGTGGGgtaagcaccgttacatgtttactgatccctcttggattttgattttttgaacctgtgatgactatcttaaaaatttggttcag
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G152127_T01 (Zea mays), 5'ss of exon 10
GGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaag-acagctaatgcat-tttttttcttctcctcgaatcagtgttcaatatagtaat--tggtcatttgccccaatttcag-----------------
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TGACGTTTACATTTCCTATCTTCCGCTTGCTCATATATTTGACCGGGTGATTGAAGAGGTGTTCATTCGTCATGGTGCTTCAATTGGATTTTGGCGTGGGgtaaggatacaaaatacatgtcctacactattactcactatcttttttattagcacaacaacaacaaagtcttttagtcctaagaaaattggaatagcaa
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM5G861300_T01 (Zea mays), 5'ss of exon 10
GGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagctaatgcatttttttt---------cttctcctcgaatcagtgttcaa--tatagtaattggtcatttgccccaatttcag
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CGACGTTTACATGTCTTACCTTCCTCTTGCACACATCTTTGATCGCGTTGTGGAGGAATTGTTTATTTTCCATGGTGCCTCTATTGGATTCTGGCAAGGGgtaag-catcaatggcactgttctcacctgaatacctttttgttattttatactgggcctctagtgactgttaatttgttt--gtcacag
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G36910.1 (Glycine max), 5'ss of exon 10
GGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaag-acagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcag----------------------------------------------------------
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AGATGTATACATATCATACCTTCCTCTTGCACATATCTTTGATAGGGTCATTGAGGAGGCAATGATAATGCATGGTGCCTCAATAGGTTTCTGGCGTGGAgtgagtatatgtgccaaatctttcatttcttgatgaaggcttcatatgattattgagctttatatttggctttatcacaagaaaagtcaaactttgtacttgacactaatgtgaacacaatttgtgcaatggctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351028751|gb|FQ433181.1|FQ433181EST: TTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGG GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCAACTATTTTC
genomic: TTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagc ... ccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATGTATTTATTTCATATCTTCCTCTAGCACATATCTTTGATCGGGTGATTGAAGAGTTATTTATTTCTCATGGTGCCTCAATAGGATTTTGGCGAGGGgtaagacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcatttgccccaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA