1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGTTCTTCCAGCTCCCAAGGAGGTTGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttggcttatcttctaagtgattctatgttcaaggagtccaagtatggctcttgaactttgctcaaaagggatattataatgttaaattgcttttggcctacaaaatctgaaagaggggcttgttttacag
species | Vitis vinifera |
transcript | Vv02s0025g01380.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|56409333|gb|CX017585.1|CX017585
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|110382139|gb|EC938589.1|EC938589
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|110379229|gb|EC944411.1|EC944411
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|37184191|gb|CF603545.1|CF603545
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|33405349|gb|CF210976.1|CF210976
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|110370959|gb|EC934612.1|EC934612
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|30297299|gb|CB974093.1|CB974093
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGTCATTGAACAGAAACTCACAACTTCATGGAEST: gi|34544409|gb|CF512641.1|CF512641
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|56409540|gb|CX017792.1|CX017792
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|161710525|gb|FC058533.1|FC058533
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGAEST: gi|56409207|gb|CX017459.1|CX017459
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
EST: TGTTACCCAACCAAAATCAGCTCCCACACCCAAAGTTACTCCAGCTCCAG CTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
genomic: TGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttgg ... tgttttacagCTTCAACTTCTGCCGAAATTGCCATTGAACAGAAACTCACAACTTCATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTCTTCCAGCTCCCAAGGAGGTTGTTACCCAACCAAAATCAGCTCCTACACCCAAAGTTACTCCAGCTCCAGgtatgcttggcttatcttctaagtgattctatgttcaaggagtccaagtatggctcttgaactttgctcaaaagggatattataatgttaaattgcttttggcctacaaaatctgaaagaggggcttgttttacag
- - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC