Sequence
atgc intronic sequence ATGC exonic sequenceCTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtcttttctactatacagatagttctataatattttcccttatcataattcagatctactgatcattaacataggaaaccaacataatcagtgtat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 5'ss of exon 11
CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtc-----ttttctactatacagatagttctataatatttt-cccttatcataattcagatctactgat-cattaacataggaaaccaacataatcagtgtat
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CTTGAGATTTTGTCAAACGGCGGCTCCCTTCATGAGGTGGCACATATTGCAAATGGATCACATCCAAGGAATTGCATCTCTCTTCTTCGCATTAACgtgagtacccaattaccacctctctgaatgatgccatgttttttcgtccttgtagtagtt--aatttcctgattcaagagcatg----atcataataattgaagtg-
upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G34070.1 (Glycine max), 5'ss of exon 10
CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtcttttctactatacag------atagttctataatattttcccttatcataattcagatctactgatcattaacataggaaaccaacataatcagtgtat
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ATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattgtccgaattaatggagtattgttctctgatagaaatcacctttttccctgtccccttcttgtctctcctatagaagaaaaaaatatgtg------
upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 10
CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaag--tcttttcta---ctatacag-atagttctataatatt--ttcccttatcataattcagatctactgatcattaacataggaaaccaacataatcagtgtat
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ATGGATACTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAATgtaagatcattttccaaattaatggagtattgttctctggtagaaatcacctttttcctgtcc---ccttcttgtctctccaatagaagaaaaaaaacatatg-----
upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G46880.1 (Arabidopsis thaliana), 5'ss of exon 9
CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtctt----ttctactatacagatagttctataatattttcccttatc--ataattcagatctactgatcattaacataggaaaccaacataatcagtgtat
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CTAGAGGTTTTGTTCAATGGTAATTCACCTCATGAAGTTGCTCATATCGCAAATGGTTCACATCCTGGAAATTGCATCTCTCTTCTTCGAATCAATgtaagtttcaaaccttcattaaaaccctaattcaaagatttcaattttttccgaataaattagggtttttgcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255074|gb|CB971521.1|CB971521EST: TTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAAT GTGGCCAGCAATTCATCACAGAACGTAGAGCTCATGCTGCAAGAGAGCTGC
genomic: TTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtcttt ... atgcatgcagGTGGCCAGCAATTCATCACAGAACGTAGAGCTCATGCTGCAAGAGAGCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATgtaagtcttttctactatacagatagttctataatattttcccttatcataattcagatctactgatcattaacataggaaaccaacataatcagtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa