Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAAGCTTTGTTTCAGACACATGAGAACTTGGAGCACCTGGCCATGATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGAgtacgtgccctcttgataaaccatttgttatcattcaatgctgtaaaggtgacattagttcatctgtcattataatttttttctttctaatcactgattgttggttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 10
GGAGAAGCTTTGTTTCAGACACATGAGAACTTGGAGCACCTGGCCATGATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGAgtacgtgccctcttgataaaccattt-gttatcattcaatgctgtaaaggt--gacattagttcatctgtcattataatttttttctttctaatcactgattgttggttcag
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GGAGAAGCATTGTTTCAGACCCATGAAAACTTGGAGCATCTTGCTATGATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgt-tgctgtccttgatccgtctcattgtcagtaagcattcacagcattggggattagtaggtattgtgtgctcatttgttgcttgtatgtag----------------
upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 5'ss of exon 12
GGAGAAGCTTTGTTTCAGACACATGAGAACTTGGAGCACCTGGCCATGATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGAgtacgtgccctct-tgataaaccatttgttatcattcaatgctgtaaaggtgacattagttcatctgtcattataatttttttctttctaatcactgattgttggttcag------------------------------------------------------------------------
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GGTGATGCGCTGTTTCAGACTCATGAGAACTTGGAGCATTTGGCTATGATGGAGCGGGTTTTAGGTCCCATTCCCGTTCACATGATAAGGAGGGCAGAgtacgttttttttcttgttaactttattttgcc-caaattactttggctatcctgtcggtttacttaatggtatagagtggt-cacgctgagttctgtgcgtatgttaaggttttaccgactagtaaatgtctatggactttaatattgctaacatgttgtatggattacacaaatattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698778|gb|EE076668.1|EE076668EST: ATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGA CCGACATGCTGAGAAGTATGTTAGAAAGGGTAGATTGGACTGGCCTGAANG
genomic: ATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGAgtacgtgccc ... gttggttcagCCGACATGCTGAGAAGTATGTTAGAAAGGGTAGATTGGACTGGCCTGAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAAGCTTTGTTTCAGACACATGAGAACTTGGAGCACCTGGCCATGATGGAAAGGGTTTTAGGCCCCATACCTCCTCATATGTTGAAAAGAGTGGAgtacgtgccctcttgataaaccatttgttatcattcaatgctgtaaaggtgacattagttcatctgtcattataatttttttctttctaatcactgattgttggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA