1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatgcgaatgctgctcttgatgctttaactaataacagataattatgaggcatcctttgctttatttgcttacttggacatatatcctggcttgcag
species | Vitis vinifera |
transcript | Vv01s0011g05400.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGAEST: gi|83275073|gb|DV939169.1|DV939169
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: ATTTGGAGAAATCGAAGAAAACTGCACAAAGCAGATCCTTCAAAAGACTG AGTCTCAAGGAAGCACACACCAACTCAAATTCATAAAGGTGGAGTTAGTGAEST: gi|110361352|gb|EC924819.1|EC924819
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGAEST: gi|34544805|gb|CF513037.1|CF513037
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: ATTTGGAG-AATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGAEST: gi|110362276|gb|EC925797.1|EC925797
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
EST: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTG AGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
genomic: ATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatg ... tggcttgcagAGTCTCAAGGAAGCACACACCAACTCAAATTCACAGAGGTGGAGTTAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGGATCGTGCTAAGCCAGATTTGGAGAAATCAAAGAAAACTGTACAAGGCAGATCCTTCAAAAGACTGgtttgtcatgcgaatgctgctcttgatgctttaactaataacagataattatgaggcatcctttgctttatttgcttacttggacatatatcctggcttgcag
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT