Sequence
atgc intronic sequence ATGC exonic sequenceGTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgttgtgcatcaaagtatttactctttcagttttagtaatatttcaactaaaattatcatgtgcaattttttttcttctttccattttttaatgtgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 9
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatg----ttgtgcatcaaagtatttactctttcagttttagtaatatttcaactaaaattatcatgtgcaattttttttcttctttccattttttaatgtgg-
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GTATTTGGGCTGGAATGAAGACTGTGAGATACTTTGATGGGAGGACATATGAATGGGTTGGTTTGAGTCGTCAACCCAATATTATCAGTAAGgtatgctcattagatgtcaaggggaatgaagttgc----ccagcaaagcatatggtggcattatacttttcttttttttggcatctgtcccattttta-tgcagt
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 10
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgttgtgcatcaaagtatttactctttcagtt-ttagtaatat--ttcaactaaaattatcatgtgcaattttttttctt--ctttccattttttaatgtgg
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GAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAAgtatgtttt----taagattttgattgtttttgtcatcagttattccattatgcttgaatccttgattcctattgaagttgatagctctctaacttgaaatcta-
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 10
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgtt-gtgcatc--aaagtatttactctttcagttttagtaatatttcaactaa-aattatcatgtgcaattttttttcttctttccattttttaatgtgg
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GTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAgtaggtttgttcaaccttgagagtgcatacacatggtcctagccgttgtacatccaatgagaattttgtatattttttcag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110360098|gb|EC922718.1|EC922718EST: GAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAA GTGAAACGAACATTAGGACAATTTACGCCAGCACAGTGGGACAAAGATGAG
genomic: GAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgttgtg ... ggtttcccagGTGAAACGAACATTAGGACAATTTACGCCAGCACAGTGGGACAAAGATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgttgtgcatcaaagtatttactctttcagttttagtaatatttcaactaaaattatcatgtgcaattttttttcttctttccattttttaatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta