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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGgtattttgctttctcaaattttgttaacccaatatggaagtatttgcaatatggctcggtggtttcacagtactggtctgaatttggcaaattggcag

Basic information

species Vitis vinifera
transcript Vv01s0011g03280.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408711|gb|EC974351.1|EC974351
EST:     ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAG                         GGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
genomic: ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGgtattttgct ... aaattggcagGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
EST: gi|110390370|gb|EC955275.1|EC955275
EST:     ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAG                         GGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
genomic: ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGgtattttgct ... aaattggcagGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
EST: gi|351038699|gb|FQ464565.1|FQ464565
EST:     ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAG                         GGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
genomic: ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGgtattttgct ... aaattggcagGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
EST: gi|30303438|gb|CB980232.1|CB980232
EST:     ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAG                         GGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC
genomic: ATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGgtattttgct ... aaattggcagGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCC