Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtatttctataccatcatttagtgtctttccagatgacatcttctttcagttctactttaggagtgcaaatttgatagcctgattattactttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G32670.1 (Glycine max), 5'ss of exon 10
GTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtatttctataccatcatttagtgtctttccagatgacatcttctttcagttctactttaggagtgcaaatttgatagcctgattattactttttt--
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GTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGGgtcagtactcc-acccta-cattatggctctttatattgcatatctttaatgtcattagccattttcccccatgcttgagagctttttaaatcctggaacct
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G34710.1 (Glycine max), 5'ss of exon 10
GTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtatttctataccatcatttagtgtctttccagatgacatcttc--tttcagttctactttaggagtgcaaatttgatagcctgattattactttttt---
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GTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGGgtcagtact-ctacccta-catt--atgcctttatattgcatatctttgatgtcattagcatttttccccc-catgcttgagagctttaaaatcctggaacctgg
upper sequence: Vv01s0011g02950.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G68820.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtatttctataccatcatttagtgtctttccagatgacatcttctttcagttctactttaggagtgcaaatttgatagcctgattattactttttt
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ATTACTTGGCTGGTGGTCTATCGATGAAGGAAGTCGGGAAGAACAAGCAAGGCTCTACTCTGGAGAAGCTACTGGgtaaagctctc---atcttttgctaacaagtcgtcaatttggctctgttaacaacaattttgtttgact-cag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706707|gb|FC055073.1|FC055073EST: GAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGG GTACAACACTTTCTCACCTGATACTGTGAAGAA
genomic: GAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtattt ... aaatattcagGTACAACACTTTCTCACCTGATACTGTGAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGgttagtatttctataccatcatttagtgtctttccagatgacatcttctttcagttctactttaggagtgcaaatttgatagcctgattattactttttt
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - AAGAAC