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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAAGAGGCTGGTGGGACAGTTACCTGCATGGATGGTGGCAAATTTTGTGTATTTGACAGATCTGTTTTGGTATCCAATGGTGTGTTGCACTCAAAGgttagtattgttccatgttttttcttttccacaaacttgatttagatccttgtttttgaaccttgttagatgttggtcaagtcattcatatttgatggtg...

Basic information

species Vitis vinifera
transcript Vv01s0011g01800.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 9
AGTTGAAGAGGCTGGTGGGACAGTTACCTGCATGGATGGTGGCAAATTTTGTGTATTTGACAGATCTGTTTTGGTATCCAATGGTGTGTTGCACTCAAAGgttagtattgttccatgttttttcttttccacaaacttgatttagatccttgtttttgaacct-tgttagatgttggtcaagtcatt--catatttgatggtg
 ||||| || |||||||| |||||| |  | |||||||| || || |||||||| ||||| |||||||||||||| || ||||||  | | ||  ||||||||||| || ||| |  ||||   |||   | | | ||   ||  | | ||    ||  ||   |||    ||    | |   |  |  ||  ||| || |  
GGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGgttagtctt-ttcta-attttgcttttgggagacatttatattgcaccttttggattacactggtgtcctttgactctaagagctctaacaggtttcatcgc-