Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01590.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgt--tatggagttacatttttaaactgatatctttctctcctactgacatgct-ggtatgtaacctgcttttaaattgttctgtg-cag----------------------------------
  | || || || || ||||| |||||||| |||||||| ||||| || || || |||||||| ||||| ||||| || ||||||||||||||| |||||||  ||     |  |   |   | |   ||    |   |  |  |   |  ||  |||  |   |    | ||     || |||| ||                                   
GCTTATAGTCTGTGAGCTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTCAACAGAGAATCAGGAGGCGAGGTCTATTTCACAATGCCAAGACTGCAGgtattactagctagctaataggatccagtaatggtgattaatgtttttactctcagtaaatggacacaatataccaatttttgtgacaataattgattttccttttgcgtaccctttctgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgt--------tatggagttacatt-----tttaaactgatatctttctctcctactgacatgctggtatgtaac--ctgcttttaaattgttctgtgcag-------------------------
  | || || || |||||||| ||||||||  ||||||||||||| ||||| || |||||||| || || |||||||||||||||||||||||| | |||||        ||  ||||||   |     || | | |||  |  |  |   | ||  | |      ||||  ||  |   |||| |  |    ||   |                          
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTATGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTCCAGgtatttgttttaccgagttatgatgtccattaatattgacttaatgtttcacaaccaataatggaatatgagactacaatttttcacattgattgaatattttttctttgttgtgcccttggcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGg--ttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag------------------------------------
  | || || || |||||||| ||||||||  |||| |||||||| ||||| || |||||||| || || |||||||||||||||||||||||| ||||||  |||  ||| ||  || |  | || || |     | |  |  ||||   | |  |   |||  | || || | | ||      ||                                    
GCTGATAGTCTGTGAACTTCTGAAGGCAAATCTGTACGAGTTTCAGAAATTCAACAGAGAATCAGGGGGTGAGGTTTACTTCACAATGCCAAGACTGCAGgtattactgagctaggttatcca-ctaatgttgacttattgt-ttgactaccagtaacaaaacacgattctacaatttttcacatagatttgatatttttttctttgttgtaccccttggcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgtt-atggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag
 ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||||| || || || || ||||| |||||||||||||||||||||  | | ||  |||||      |||| | |   | |  |  |  |         || || || ||| | ||||| | |||||||
GTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaact-cttctgaattgatgtgtgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 6
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgtt-atggagttacatttttaaactgatatctttctctcctactgac-atgctggtatgtaacctgcttttaaattgttctgtgcag
 ||||| ||||| || || || || |||||||||||||||||||||||||||||||||||||| || || || || ||||| |||||||||||||||||||||  ||| ||   ||||      |||| | |   | || |  |  | || ||  | || || || ||| | ||||| | |||||||
GTTAATAGTATGTGAGCTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcat-tgcaaact-cttctgaattgatgtgtgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgt--tctgtgcag-----------------------------------------------
 ||||| ||||| ||||| || || || || || ||||||||||| ||||||||| ||||||| || ||||| || || ||||| |||||||||||||||||||  | | |    | | | | || | | | | | |     |  ||||||| | ||||   || | || | || |  ||  | | |                                               
GTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGgtta--gtgctgtgctgtgata-tgttctttctatatttacttatcatgctgtt-tgtactgtgatctttagttttcatcctttctgctagtgcaatactgtcattataaacacttttcaacttatgtgtgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggta-tgtaacctgc--ttttaaattgttctgtgcag----------------------------------------
 ||||| ||||| ||||| || || || ||||| ||||||||||| ||||||||| ||||||| || || || || || ||||| |||||||| |||||||||   |   | |  |  ||   |  | |  |  |  | ||      || | ||| ||| | ||    |||| |    |||||   ||                                        
GTTAATAGTATGTGAACTACTTAAAGCCAACTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGTGAAGTGTATTTCACGATGCCAAGGTTGCAGgtttgtggtgtgccgtgatatgttctttttatatttacatatcatgctgtttgtactgtgatctttagttttcatcctttctgc-tagtctaatactgtcataaacacttttcaacttatgtgagcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaa-actgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattg---ttctgtgcag
 ||||| ||||| ||||||||||||||||||||||||||||| || || |||||||| ||||| || || |||||||| ||||| |||||||||||||||||||   |   |||| ||||  ||| ||   |||      |  |  ||  ||| | | | |  | ||| |||||     |  |||||||
GTTAATAGTATGTGAACTTCTCAAGGCAAACTTGTATGAGTTCCAAAAGTTTAATAGGGAATCAGGGGGAGAGGTTTATTTCACTATGCCAAGATTGCAGgttagcca---acatctttactactcatcagttttatgtatgttttca--ctgctctctcattttcttctaaatcaaaatattgtgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGgttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcag
  |||||||||| |||||||| ||||| ||  | || || || || |||||||| |||||||| || || || ||||| ||||| ||||||||||||||||||     | | |||  ||||      ||  ||      ||   | |     |  |   |    ||||   || ||||||| |||
GCTAATTGTATGTGAACTTCTTAAGGCCAATCTATACGAATTCCACAAATTTAACAGAGAATCAGGTGGTGAAGTTTATTTCACGATGCCAAGATTGCAGgtttgtccgcttcatcattaa-----cattcttaatagatatgtataaatccgagttctaatctctttgggatcgttctgtacag