Sequence
atgc intronic sequence ATGC exonic sequenceTTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 10
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacag
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TCCCATATTGGCCAGCTGCACTATATACAGCTGTGCCTAGTCGCTCATTCTTCCCAAGGGGATTTCTATGGGATGAGGGCTTCCATCAGTTAGTCATTTGgtaagcatttcatcgatcttgatgtgtagcgcagggcttctgccactatatcatcactcgctttttttttgaatctgtgctggtattattgctgcttgtttaacacatccttgatgg-tgatgtatag--------------------------------
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G126468_T01 (Zea mays), 5'ss of exon 10
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacag
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TTTCATATTGGCCTGCTGCATTATATACAGCTGTCCCCAGCCGCTCTTTCTTCCCAAGGGGATTTCTGTGGGATGAGGGCTTCCATCAGTTAGTCATTTGgt-----aactattactttttatctcagcgttgaatgaaggttttcttctgt-ctgctc-----taactcacatccttggtggt---gatgtgcag----------------------------------------------------------------
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G10870.1 (Glycine max), 5'ss of exon 11
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacag-------
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TGTCGTATTGGTCTGCTGAGCTTTACACAGCTGTACCAAGTCGATCTTTCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTTATAATCTGgttagtt-----tttttgttc-taataatatccttcacgaccaccacca--ccattattacta-ttattgttgttgttgactgcacaagacttacctttatta---attaacaaataaattacctgtgatgta-taaatatgctttgcacttgtgcacattaaccag
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 10
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgt-tccacttaacatatttctg-actcttgaacag-------
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TGTCGTATTGGTCTGCTGAGCTTTACACAGCTGTACCAAGTCGATCTTTCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTTATAATCTGgttagtttttttgttctaataatatcc----ttcattaccaccacctctagtatta-ttattg-ttgttgttgttgttgactgcacaag-acttacctggattaat-taacaaataaattactcgtgatgtatacatattctttatttgcacttgtgcacattaaccag
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 10
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaa--taaatcttcctttgttccacttaacatatttctgactcttgaacag-----------------------------
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TATCATATTGGCCTGCTGAGCTTTACACAGCTGTACCATGTCGACCTTCCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTAATAATCTGgttagtttcttgtgctaataatatccttcatgacctcaaccactactactatcatcattatcatttgtctttgtttgaaattcagtttaagtgcagttttcttgactgcacaagacttactggtattatttagcaaacaaataatctatgatctgtaaatatgtttttttgatcttgttcacattaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77583689|gb|DV220878.1|DV220878EST: TTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTG GCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTT
genomic: TTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgat ... tcttgaacagGCGTTGGGACATCCGCATTTGTTTGGATATAATTGGACATTGGTTAGATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCATATTGGCCGGCTGAACTTTACACAGCTGTTCCAAGTCGATCCTTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAGCTACTAATTTGgttagttgattattattgtttgcatttgcattttgttttttctccctcaagtgctggttatcaattacctacatctttagggaaataggtgttcattttgccacacattggaaataaatcttcctttgttccacttaacatatttctgactcttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT