Sequence
atgc intronic sequence ATGC exonic sequenceTATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAgttcgtatatttcttttctttttcatccctccatttttgttcttcgaagttaggatactataatgaatagcttgaaaacttaattcacaagatggaattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G042253_T01 (Zea mays), 5'ss of exon 9
TATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACT---TTTGGACAATGAAGAGCAGAAAgttcgtatatttcttttctttttcatccctccat-ttttgttcttcgaagttag-gatactataatgaatagcttgaaaacttaattcacaagatggaattg
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---TGAGGAAGGTGTTGTAGTTGGTGGTGGATGTAGCCTACTAAGACTGTCAGAGAAGATTGACGCAATCAAGGAATCATCGTTGGATAATATAGAGCAGGAGgtactttaataatttcctgtatttatcttaaagggtgttatgtttaaaaaatattgataatttgaggagctatcagcagaccc--ttaaccttttataactt
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G13980.1 (Glycine max), 5'ss of exon 10
TATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAgttcgtatat-ttcttttctttttcatccctc--catttttgttcttcgaagttaggat----actataatgaatagcttgaaaacttaattcacaagatggaattg------------------------------------------------------------
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AATCGAGGAAGGTGTAGTGGTCGGTGGTGGCTGTAGCCTTTTAAGACTATCTCAAAAGGTGGATGGCATAAAAAAACTACTGGACAATGAAGAACAACAGgtaattatctgttccatactaagttttccttcatcatgtttgaagtttataattataactaaggtcttatttagttattttacaatctattgcaagcattcattttgtgatgtgccttttattgactgttcaagatatgaaaattttatctgtaatattatatctag
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G09520.1 (Glycine max), 5'ss of exon 10
TATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAgttcgtatatttcttttctttttcatccctccatttttgttcttcgaagttaggatactataatgaatagcttgaaaacttaattcacaagatggaattg-------------------------------------------------------------------------
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AATCGAGGAAGGTGTAGTAGTTGGTGGTGGCTGTTGCCTTTTAAGACTATCCCAAAAGGTGGATGGCATAAAAAAACTCCTGGAAAATGAAGAACAACAGgtaattatctgttccatactactaagttttcctttatcgtgtttgaagtttataat--tataactaagctcttattag-ttatcttacaatctattgcaagcattcattttgtgctgtgcctttttattgactgttcaagatatgaaaattttatctgtaatattatctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349815420|gb|FQ400575.1|FQ400575EST: CTTTAAAGGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAA ATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATT
genomic: CTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAgttcgtatat ... atctgggcagATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGTAGCCTTTTGCGACTATCTTTAAAAGTGGATGGCATCAAAGAACTTTTGGACAATGAAGAGCAGAAAgttcgtatatttcttttctttttcatccctccatttttgttcttcgaagttaggatactataatgaatagcttgaaaacttaattcacaagatggaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa