Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag

Basic information

species Vitis vinifera
transcript Vv00s0324g00040.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G01960.1 (Glycine max), 5'ss of exon 7
GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag
|| |||||||||||||||||| ||||| |||| ||||  ||||| || || |||||||| ||| | || |||||||||||||| ||   | ||  ||  ||| | |  ||   ||  ||       ||| ||   |    ||| ||| |         |  ||| |||    |              
GTCTTGTCAGATGATGAGAAACGATCCATATATGACACATATGGAGAGGCTGGACTTAAGGGTTCAGGAATGGGCATGGGGgtaagct-acctttaaagatgatgag-gagtttgactttg----ttatcatatttcctgtttctcaaagacggatcatttttgtgatttcag--------------

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G14290.1 (Glycine max), 5'ss of exon 7
GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag
|| || ||||||||||||||| ||||| |||| ||||||| ||| || || || ||||||||| |||  ||||| |||||||| |||  | |||  ||  || |  |  |      ||| |     | || ||  ||||||| |  ||   |  | |||   |     ||                 
GTGTTATCAGATGATGAGAAACGATCCATATATGACAGGTTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGGgtaagtt-acctctgatggtgatgtataa------tttta-----ttttgttt-tttgtttctcaacgaatgatttctctgttatgccag----------------

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G31080.1 (Glycine max), 5'ss of exon 7
GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag
|| || ||||||||||||||| ||||| |||| ||||| | ||| || || || ||||||||| |||| ||||| |||||||| |||  | |||  ||  || |  |  |      |||   | | | |||||   |||||| |  |    |  | |||   ||  ||    |              
GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagtt-acctctgatggtgatgtataa-----tttt---attttgttatt--cttgtttctcaatgaatgatttctttctgtcatgccag--------------

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G38040.1 (Glycine max), 5'ss of exon 7
GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGGGCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag
|| |||||||||||||||||| ||||| |||| || |  ||||| || || |||||||| ||| | || |||||||||||||| |||  |  |  ||  ||| | |   |     ||||       ||||    ||||  |     |||  | || | |||||                        
GTCTTGTCAGATGATGAGAAACGATCCATATATGATACATATGGAGAGGCTGGACTTAAGGGTTCAGGAATGGGCATGGGGgtaagtt-acttttaaagatgatgaggaatttgactttgttgtcatatttcctgttt-ctcaaagacacat-ctttgtgatttcag--------------------

upper sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT4G39960.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTTTGTCAGATGATGAGAAAAGATCCTTATACGACAGGTATGGGGAAGCAGGACTTAAAGGTGCTGGTATGG---GCATGGGGgtgagtagatctccaataatgctaaaagaaaatgctttcagaatctattattggtttgttttttcacatctactctctgattgggatcattgcttccctgtgccag
 | || ||||||||||||||||||||  |||||||||| ||||| || |||||| ||||||| ||||| ||||   |||||||||| |||| ||     ||  | ||  |||| |    ||| |      || |    | || |  |    ||||  |||   ||||  |   ||||             
ATCTTATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTGGAATGGGAGGCATGGGGgtaagtatat-----atgtttctctaagaca----tttga------atcaacattctgatgataagaatcttatctgaaattgttaattttgcag-----------