1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTCGGGGCAATATGTTGCTTTAGTGCCTTTTGTTTTAAGAGCCTTTATGGTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcattatgagaatacaaaattgtttttaattttaatttcattattctatatcatatttgctacaatttcatgcttaacttttgtagtttagtaa...
species | Vitis vinifera |
transcript | Vv00s0282g00040.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAG GGACCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCGEST: gi|110376483|gb|EC941548.1|EC941548
genomic: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcat ... gccatcgcagGGACCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCG
EST: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTTGTTTTTGCTACTCAG GGTCCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCGEST: gi|71871367|gb|DT020422.1|DT020422
genomic: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcat ... gccatcgcagGGACCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCG
EST: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTTGTTTTTGCTACTCAG GGTCCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCG
genomic: GTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcat ... gccatcgcagGGACCTGTCAATTATGTATGCCTCCATTGTGTGAAACCAAGTTTGCGTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGGGGCAATATGTTGCTTTAGTGCCTTTTGTTTTAAGAGCCTTTATGGTTTCCTAGCTCTTTTCTCAATTGGTGAATTACTCGTTTTTGCTACTCAGgtaatttcattatgagaatacaaaattgtttttaattttaatttcattattctatatcatatttgctacaatttcatgcttaacttttgtagtttagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaata