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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTCCTCCCTTGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaactgctttaagtgaacttgaaaatccttgtaatatttatttgttcatcaacacacatttatctttctatgtaaaacgtttgtaatctacaa...

Basic information

species Vitis vinifera
transcript Vv00s0187g00340.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110690312|gb|EE067299.1|EE067299
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|161719983|gb|FC067725.1|FC067725
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110363209|gb|EC926783.1|EC926783
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110402111|gb|EC968746.1|EC968746
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110361741|gb|EC925237.1|EC925237
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|161721615|gb|FC070825.1|FC070825
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110364853|gb|EC928407.1|EC928407
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110372453|gb|EC936619.1|EC936619
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110392090|gb|EC957263.1|EC957263
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|45771743|gb|CN007595.1|CN007595
EST:     TGCCGTAT-TGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGCATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
EST: gi|110733040|gb|EE108853.1|EE108853
EST:     TGCCGTATCTGGCTGAAAAA-TATCCCAAAACTATGACATTTTCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAA-TTCGTGCATTG
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTG
EST: gi|110702040|gb|EE080300.1|EE080300
EST:     TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAG                         GTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT
genomic: TGCCGTATCTGGCTGAAAAAATATCCCAAAACTATGACATTTCCTTAGAGgtatatcaaa ... tttttgcaagGTTGGGATTAAACCTGCTGGACATAAAAATTCGTGCATTGTCACAAGGAGT