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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCTTGCGACCGGATCGCTTATGATGCTGATCTCCTGGGCTACTAGGATCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatgaagtaatattaatgtttggttgcttgaaagatggcgtttttggtggtaagggtttatacttgttgggttggtgagcaaatgtgggaaaaag...

Basic information

species Vitis vinifera
transcript Vv19s0177g00300.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300650|gb|CB977444.1|CB977444
EST:     TCGCTGAAACTCCTAAGACTGATTTTGAGTTTTGGAAGACCCTTTTTCCT                         GTTGCTGTGGCCCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
genomic: TCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
EST: gi|110719157|gb|EE096814.1|EE096814
EST:     TCGCTGAAACTCCTAAGACTGATTTTGAGTTTTGGAAGACCCTTTTTCCT                         GTTGCTGTGGCTCATACAATAGGGCATGTGGCTGCAACAGTGAGTATGTCC
genomic: TCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
EST: gi|110709543|gb|EE085094.1|EE085094
EST:     TCGCTGAAACTCC-AAGACTGATTTTGCGTTTTGGAAAACC-TTTTTCCT                         GTTGCTGTGGCTCAAACAATTTGGGCAAGTGGCTG
genomic: TCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATT-GGGCATGTGGCTG
EST: gi|110382211|gb|EC938786.1|EC938786
EST:     TTGGAAGACCCTTTTTCCT                         GTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
genomic: TTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
EST: gi|110380178|gb|EC945423.1|EC945423
EST:     GATTTTGAGTTTTGGAAGACCCTTTTTCCT                         GTTGCTGTGGCTCATACAATGGGGCATGTGGCTGCAACAGTGAGTATGTCC
genomic: GATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
EST: gi|37186193|gb|CF605546.1|CF605546
EST:     TCGCTGAAACTCCTAAGACTGATTTTGAGTTTTGGAAGACCCTTTTTCCT                         GTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC
genomic: TCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatga ... tgttttgtagGTTGCTGTGGCTCATACAATTGGGCATGTGGCTGCAACAGTGAGTATGTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGCTTGCGACCGGATCGCTTATGATGCTGATCTCCTGGGCTACTAGGATCGCTGAAACTCCTAAGACTGATTTTGCGTTTTGGAAGACCCTTTTTCCTgtaagtatgaagtaatattaatgtttggttgcttgaaagatggcgtttttggtggtaagggtttatacttgttgggttggtgagcaaatgtgggaaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa