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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat...

Basic information

species Vitis vinifera
transcript Vv19s0177g00140.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G018375_T02 (Zea mays), 5'ss of exon 1
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgt----ttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat
||| || ||||| ||||||||| | |||||  | ||||| || || || |||||||||||||||||||| || || |||||||| ||| |||| |||||||| | |           || ||||  |    ||    ||||   ||  ||    |  ||  ||| |  |  |  |    || | | |    |            
CACCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTTCCCGGCATGATCGTCACCGGAATGGAGGTCGCCGAGATTGACGGCGCCCCCAGGATGgtcagtagtgaggaagacaatactcatgtcattgcgatactcactgaatcaatgaggaatatgtctaaa--attgtctgttggttgttgcag------------

upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttcttt----------ctcactacttgtttttagtacttt-ttgtttcttgaaaaaaattgtttggacaaaagatcattagata----tatttgaaaatttaaaat------------------------------------
| | || ||||| ||||||||| | |||||  | ||||| ||||| || |||||||||||||| ||||| || || ||||| || ||| |||| |||||||| | |   |  ||           ||  |||  || |  || | |||  |||      ||   |  |  || |||  | || |   ||| |     || |    ||||   |||                                    
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag

upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G42080.1 (Glycine max), 5'ss of exon 2
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactt-tttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat
|| ||| |||||||  || ||||||||||| |||||||| ||||| || ||||| || || || ||||||||||| |||||||||||  | |||||||||||||  ||||  | ||||   |     || |   |||| ||   ||   ||     |      |    |||  ||  |   | | |||||  ||| |  | 
CAAGGCTGAGGATGCCATTGTGAGGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGgtaaaattctattatctcttgatactcttgtgccacttattcaatttgagatttttaaaacaagttttaaaattctctcagtgt-tttgattattaatgaa

upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G16380.2 (Glycine max), 5'ss of exon 2
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat-----
|| |||||||||||  || |||| |||||| |||||||| ||||| || ||||| || || || ||||||||||| |||||||||||  | |||||||||||||  ||||  | || |   |      | | || |   |||||   |     |  ||  ||      ||  |  |||   ||  |  ||||||| | ||     
CAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGgtaaaattctattatcacttgatgatactcttgtgccacttgttcaatttgggatttttctt---tttaatttttttaaggatgat--aaaatttgagattgatg

upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ04508 (Selaginella moellendorffii), 5'ss of exon 1
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat
||| || ||||| | |||||||||||||||  | ||||| || || || ||||||||||| || |||||||| || ||||| |||||  | || ||||||||||     || ||  ||  |  ||||| |  || |||   |||||| |     |                                             
CACTGCCGAGGACGCGATCGTGAGGCTCACTCGCGAGGTTGTTCCTGGGATGATCGTCACTGGCATGGAAGTCGCGGAGATCGATGGGGCACCGAGGATGgtaaagaggtttttgttctttctttgttgtccgt-cttaacgtttctcggttccag--------------------------------------------

upper sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ26284 (Selaginella moellendorffii), 5'ss of exon 1
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat
||| || ||||| | |||||||||||||||  | ||||| || || || ||||||||||| || |||||||| || ||||| |||||  | || ||||||||||     || ||  ||  |  ||||| || || |||   |||||| |     |                                             
CACTGCCGAGGACGCGATCGTGAGGCTCACTCGCGAGGTTGTTCCTGGGATGATCGTCACTGGCATGGAAGTCGCGGAGATCGATGGGGCACCGAGGATGgtaaagaggtttttgttctttctttgttgttcgt-cttaacgtttctcggttccag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351017297|gb|FQ435649.1|FQ435649
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|26261651|gb|CA812714.1|CA812714
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352763450|gb|FQ473153.1|FQ473153
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352768976|gb|FQ468167.1|FQ468167
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|83275021|gb|DV939117.1|DV939117
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|37185318|gb|CF604671.1|CF604671
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352778213|gb|FQ465523.1|FQ465523
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|27755025|gb|CB035780.1|CB035780
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110393820|gb|EC959332.1|EC959332
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30131637|gb|CB916976.1|CB916976
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATAT
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATAT
EST: gi|30127354|gb|CB912693.1|CB912693
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|32245122|gb|CD710941.1|CD710941
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110687377|gb|EE064733.1|EE064733
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352772932|gb|FQ470547.1|FQ470547
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30135292|gb|CB920630.1|CB920630
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30252341|gb|CB969892.1|CB969892
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110366509|gb|EC930419.1|EC930419
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30135606|gb|CB920944.1|CB920944
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30130037|gb|CB915376.1|CB915376
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352764510|gb|FQ472867.1|FQ472867
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110384932|gb|EC949403.1|EC949403
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30128219|gb|CB913558.1|CB913558
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110403508|gb|EC969076.1|EC969076
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|22009023|gb|BQ794057.1|BQ794057
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352781759|gb|FQ469057.1|FQ469057
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352773832|gb|FQ472964.1|FQ472964
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|22011821|gb|BQ796855.1|BQ796855
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110375598|gb|EC940603.1|EC940603
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|46919736|gb|CN549065.1|CN549065
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110400735|gb|EC967312.1|EC967312
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352768939|gb|FQ468130.1|FQ468130
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30130449|gb|CB915788.1|CB915788
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30252305|gb|CB969856.1|CB969856
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110687348|gb|EE064690.1|EE064690
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110373515|gb|EC937758.1|EC937758
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110389943|gb|EC954818.1|EC954818
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|22011639|gb|BQ796673.1|BQ796673
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|32250102|gb|CD715921.1|CD715921
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110358203|gb|EC922251.1|EC922251
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110377970|gb|EC943076.1|EC943076
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110392089|gb|EC957261.1|EC957261
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110411974|gb|EC977705.1|EC977705
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110418600|gb|EC984760.1|EC984760
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30255138|gb|CB971585.1|CB971585
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110398508|gb|EC964920.1|EC964920
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110699812|gb|EE077155.1|EE077155
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30329885|gb|CD013147.1|CD013147
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352777346|gb|FQ473980.1|FQ473980
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352774194|gb|FQ474717.1|FQ474717
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110702619|gb|EE081165.1|EE081165
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGG
EST: gi|28959283|gb|CB339642.1|CB339642
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|37184186|gb|CF603540.1|CF603540
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110377512|gb|EC942580.1|EC942580
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|30124943|gb|CB910282.1|CB910282
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352773412|gb|FQ472194.1|FQ472194
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|37185590|gb|CF604943.1|CF604943
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGG
EST: gi|352764200|gb|FQ471180.1|FQ471180
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|352776681|gb|FQ465479.1|FQ465479
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
EST: gi|110426084|gb|EC992481.1|EC992481
EST:     TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATG                         GGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG
genomic: TGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttct ... ggtaatgcagGGACCGACATTCGGAGCGATGATGATATCAGGGCAGAAGGCAGCTCACTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttctttctcactacttgtttttagtactttttgtttcttgaaaaaaattgtttggacaaaagatcattagatatatttgaaaatttaaaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt