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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTCATCTCAAACGGATATAAAAGCTATAAACCCTAGTCTCCCCGTCGGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatgattattctaaaccccaattccatccgatattccctaatttttttgtttatttgcctagaaaacagaggtaaattttaggaaataggtataa...

Basic information

species Vitis vinifera
transcript Vv19s0135g00100.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135992|gb|CB921330.1|CB921330
EST:     GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTTAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAACCGGATGAG
genomic: GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
EST: gi|51990043|gb|CV179498.1|CV179498
EST:     CTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTCCCTTCGGAATCGGATGAG
genomic: CTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
EST: gi|294966449|gb|GW839556.1|GW839556
EST:     GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
genomic: GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
EST: gi|71875043|gb|DT024098.1|DT024098
EST:     GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
genomic: GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
EST: gi|71869765|gb|DT018820.1|DT018820
EST:     GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
genomic: GGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG
EST: gi|71875150|gb|DT024205.1|DT024205
EST:     AGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAG                         TTTCACCAGTACCAGGTGGTAGGGAGGGCCCTCCCTTCGGAATCGGATGAG
genomic: AGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatga ... ttgggcgcagTTTCACCAGTACCAGGTGGTAGGGAGGGCCCTTCCTTCGGAATCGGATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCTCATCTCAAACGGATATAAAAGCTATAAACCCTAGTCTCCCCGTCGGAAGCTGCTCCTGAGCTTGTCTCTTATCGCCAAAATGGTTACTTTCAAGgtctgtatgattattctaaaccccaattccatccgatattccctaatttttttgtttatttgcctagaaaacagaggtaaattttaggaaataggtataa

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat