Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTgtaaatgaatttcttcctctctctctctcttttttcctccgcaacaagagacacttctaacactaatttattttcag

Basic information

species Vitis vinifera
transcript Vv19s0093g00560.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0093g00560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g43480.1 (Oryza sativa), 5'ss of exon 1
AATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTgtaaatgaatttcttcctct--ctctctctcttttttcctccgcaacaag-----agacacttc----taacactaatttattttcag------------
|||||||||||| ||||||| ||||||||||| ||||||||| |  | |  || ||||||||||| |  |||||||||  ||    |    || || |||||  | |||   ||  |||   || |||  || || |  |       | |      | |  |||      |  || || | ||  |              
AATCTCGGCAACACCTGCTACCTCAACAGCGTGCTACAGTGCCTCGCGTCGACCCCTCCCCTCGCTACCTTCTGCCTC--TCCTTCCGGCACTCCAATCTGTgtacgaaaccctagctcatactttcttcctgttctaattgattgtatgtatttgggcgattcgccaggaagctgatatgttcgcctgttggcatgcag

upper sequence: Vv19s0093g00560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G060327_T01 (Zea mays), 5'ss of exon 1
AATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTgtaaatgaattt----------cttcctctctctctctcttttttcctccgcaacaagagacacttctaacactaatttattttcag----
|| ||||||||| | ||||| ||||||||||||||||||||| |  | | ||| || ||||||||||  |||||||||      | ||| ||    |  ||||    |   |           | || ||  | | |||||||||  ||||||||     |      | |   |  ||| ||| | |    
AACCTCGGCAACACATGCTACCTCAACAGCGTCCTACAGTGCCTCGCGTCCACGCCGCCCCTCGCCACGTTCTGCCTCGCCTCTCGCCACTCCAACCAGTgtaggaaaccctagcgcccgctttaccacttgcgcgctctttttttttccgcaactcatcaagtggttgattttggtttgtttgctggtag

upper sequence: Vv19s0093g00560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G18720.1 (Glycine max), 5'ss of exon 1
AATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTgtaa---atgaatttcttcctctctctctctcttt---tttcctccgcaacaagagacacttctaacactaatttattttcag-----------
|| || |||||||| ||||| |||||||||||||| |||||| | || ||||| ||||| ||||||||||||||||||  || ||  || ||||| ||||||||   || ||||     |  | ||  | |||||   |||  ||  ||      |    |||| || |||||   | |   |           
AACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTCACCTACACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatcaatcaattaacctcaatttcaatttctttaaattttttcttcattttctgcgttttctgac-ctaataattctcttgtttcgattcag

upper sequence: Vv19s0093g00560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G40170.1 (Glycine max), 5'ss of exon 1
AATCTCGGCAACTCCTGCTATCTCAACAGCGTCCTACAGTGCTTGACATACACACCTCCCCTCGCCAATTTCTGCCTCAATCACCTCCATTCTTCACTCTgtaa--atgaatttcttcctctctct--ctctcttttttcctccgcaacaagagacacttctaacactaatttattttcag----
|| || |||||||| ||||| |||||||||||||| |||||| | || ||||| ||||| ||||||||||||||||||  || ||  || ||||| ||||||||   |  |||||| |     | |   | |||| |||  ||  |||     |    || |   |||||||   ||  |     
AACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTCACCTACACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattccatttctcctcaattttaattttcttattttttcttcaatttctgtgtttttttgtactaattcgcttcgattcag