1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACCGAGGACCTCAATTTCCGGCGCGACCCAACTCCTGCCCCTCCGGCCGAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGgtttgtttctttgtggtgtttgtttcacttgattagctgtttggttcttgggaaattgggggaaatgggggaaaagactgaaatcttgaattcgacgtga...
species | Vitis vinifera |
transcript | Vv19s0090g01460.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAG TGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCAEST: gi|110713078|gb|EE088682.1|EE088682
genomic: GAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGgtttgtttct ... ttttctgcagTGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCA
EST: GAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAG TGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGT
genomic: GAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGgtttgtttct ... ttttctgcagTGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCGAGGACCTCAATTTCCGGCGCGACCCAACTCCTGCCCCTCCGGCCGAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGgtttgtttctttgtggtgtttgtttcacttgattagctgtttggttcttgggaaattgggggaaatgggggaaaagactgaaatcttgaattcgacgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga