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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGAAAACCCTTATCCTCTTGATTCCCATTTCTGATTTCTCTCAAGATCAAAGATTTCCAAGTTCGTTGTTTTTTTTTCTTTTTCTTCAATTTTCTCAGgtaaatattttcttttttcccaatcacttcttttgcttatgcaacagaaaccctaatttgctctgttttcaccaaaattgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g00580.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110407776|gb|EC973391.1|EC973391
EST:     GATTTCCAAGTTCGTTGTTTTTCTTTCTCTTTCTTCAATTTTCTCAG                         TGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
genomic: GATTTCCAAGTTCGTTGTTTTTTTTTCTTTTTCTTCAATTTTCTCAGgtaaatattt ... aaaattgcagTGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
EST: gi|110390932|gb|EC955876.1|EC955876
EST:     CTTCAATTTTCTCAG                         TGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
genomic: CTTCAATTTTCTCAGgtaaatattt ... aaaattgcagTGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
EST: gi|110694887|gb|EE072272.1|EE072272
EST:     AAAGATTTCCAAGTTCGTTGTTTTTCTTTCTCTTTCTTCAATTTTCTCAG                         TGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
genomic: AAAGATTTCCAAGTTCGTTGTTTTTTTTTCTTTTTCTTCAATTTTCTCAGgtaaatattt ... aaaattgcagTGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
EST: gi|110421257|gb|EC987552.1|EC987552
EST:     CTTCAATTTTCTCAG                         TGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
genomic: CTTCAATTTTCTCAGgtaaatattt ... aaaattgcagTGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
EST: gi|110422502|gb|EC988827.1|EC988827
EST:     CTTCAATTTTCTCAG                         TGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC
genomic: CTTCAATTTTCTCAGgtaaatattt ... aaaattgcagTGACGTTTCGCAACTCCATGGCCAGAAGCTCCTTCAAATTGGAACACCCCC