Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaatactaatcctacgcttattggttctgcagattttgtttgggcggtgagaaaatatgatatggttttgtggaaagagaataagatgaacgttc...

Basic information

species Vitis vinifera
transcript Vv19s0090g00420.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399610|gb|EC966124.1|EC966124
EST:     AGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110413107|gb|EC978880.1|EC978880
EST:     GTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110394027|gb|EC958394.1|EC958394
EST:     AAGGAGTAGGCTACGCTTCAG                         ACCCGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110399308|gb|EC965807.1|EC965807
EST:     GGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|34548008|gb|CF516240.1|CF516240
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110732012|gb|EE106936.1|EE106936
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|26262514|gb|CA813577.1|CA813577
EST:     CAAAGGTTT-AAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATNTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|32268526|gb|CD717685.1|CD717685
EST:     GGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|30125889|gb|CB911228.1|CB911228
EST:     GGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|32270786|gb|CD719945.1|CD719945
EST:     GGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110714445|gb|EE091358.1|EE091358
EST:     AAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|33408556|gb|CF214183.1|CF214183
EST:     AAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110394877|gb|EC960261.1|EC960261
EST:     AAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|34549846|gb|CF518078.1|CF518078
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTGATTTNCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGG
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCA-TTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGG
EST: gi|29783601|gb|CB349899.2|CB349899
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCTGATTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|352782608|gb|FQ476688.1|FQ476688
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110714735|gb|EE091984.1|EE091984
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110376519|gb|EC941583.1|EC941583
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|26262469|gb|CA813532.1|CA813532
EST:     CAAAGG-TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110394740|gb|EC960022.1|EC960022
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|351016410|gb|FQ423837.1|FQ423837
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110409750|gb|EC975420.1|EC975420
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110400162|gb|EC966709.1|EC966709
EST:     TCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110383355|gb|EC947723.1|EC947723
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|33408126|gb|CF213753.1|CF213753
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|34546868|gb|CF515100.1|CF515100
EST:     AAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110408810|gb|EC974453.1|EC974453
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110391267|gb|EC956231.1|EC956231
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110404591|gb|EC969891.1|EC969891
EST:     AAGGAGTAGGCTACGCTTCAG                         ACCATCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|34546689|gb|CF514921.1|CF514921
EST:     CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110362224|gb|EC925742.1|EC925742
EST:     AGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110703159|gb|EE079771.1|EE079771
EST:     CAAAGGTTTCAAAGGAGTAAGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110411871|gb|EC977598.1|EC977598
EST:     TTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|30322834|gb|CD006096.1|CD006096
EST:     GGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110399261|gb|EC965758.1|EC965758
EST:     TCAAAGGAGTAAGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|110398077|gb|EC964179.1|EC964179
EST:     TCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: gi|34320204|gb|CF372958.1|CF372958
EST:     AAGGTTTCAAAGGAGTAGGCTACGCTTCAG                         ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaatactaatcctacgcttattggttctgcagattttgtttgggcggtgagaaaatatgatatggttttgtggaaagagaataagatgaacgttc

- - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag