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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCGCAGATGGGTCTGTTGCGGAGCAGCTGCTCAGCGCTGTGTCACGGCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaactaccgccacctacctccacctctctctgtctctctatctgtataaatctctctcactcgaactccctcagtctcacactcaatcactgtag...

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827094|gb|FQ421367.1|FQ421367
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351031176|gb|FQ445003.1|FQ445003
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351022976|gb|FQ428885.1|FQ428885
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110720877|gb|EE097183.1|EE097183
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351026695|gb|FQ436348.1|FQ436348
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71860234|gb|DT009289.1|DT009289
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351012435|gb|FQ427036.1|FQ427036
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|161710292|gb|FC059806.1|FC059806
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351023404|gb|FQ432787.1|FQ432787
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCCCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71858274|gb|DT007329.1|DT007329
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|37185689|gb|CF605042.1|CF605042
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351012851|gb|FQ430414.1|FQ430414
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351024564|gb|FQ426373.1|FQ426373
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351014822|gb|FQ438022.1|FQ438022
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349829516|gb|FQ420048.1|FQ420048
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351019842|gb|FQ439659.1|FQ439659
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|30300500|gb|CB977294.1|CB977294
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351014217|gb|FQ434806.1|FQ434806
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|33405914|gb|CF211541.1|CF211541
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351021635|gb|FQ430522.1|FQ430522
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71864068|gb|DT013123.1|DT013123
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110711777|gb|EE088642.1|EE088642
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71855632|gb|DT004687.1|DT004687
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110711744|gb|EE088569.1|EE088569
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71861762|gb|DT010817.1|DT010817
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|294966112|gb|GW837479.1|GW837479
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110717484|gb|EE093391.1|EE093391
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351033615|gb|FQ447774.1|FQ447774
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTCGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351027861|gb|FQ448431.1|FQ448431
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351014497|gb|FQ437499.1|FQ437499
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351022046|gb|FQ437833.1|FQ437833
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|71860225|gb|DT009280.1|DT009280
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110703160|gb|EE079765.1|EE079765
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110711357|gb|EE087747.1|EE087747
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCTGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110711773|gb|EE088638.1|EE088638
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349832839|gb|FQ422961.1|FQ422961
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351015664|gb|FQ427149.1|FQ427149
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349827446|gb|FQ422314.1|FQ422314
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110700048|gb|EE077644.1|EE077644
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110713914|gb|EE090252.1|EE090252
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110719472|gb|EE094631.1|EE094631
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351024107|gb|FQ423530.1|FQ423530
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351021887|gb|FQ437674.1|FQ437674
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110712898|gb|EE088347.1|EE088347
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349832403|gb|FQ420964.1|FQ420964
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGCCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|349831123|gb|FQ420793.1|FQ420793
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|352765001|gb|FQ473649.1|FQ473649
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|110719810|gb|EE095263.1|EE095263
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|161712950|gb|FC062076.1|FC062076
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
EST: gi|352763959|gb|FQ465409.1|FQ465409
EST:     GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAG                         ATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA
genomic: GCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaact ... tgatgatcagATAAGCATGGACACACAAAATCTTGTGGCTCGGCTGAATAGTTCAGGTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATATCGCAGATGGGTCTGTTGCGGAGCAGCTGCTCAGCGCTGTGTCACGGCCCCCGGACTGCTTCCGTTCTCCGACCCTCCGCTGTCCTCACTCGCCAGgtactcaactaccgccacctacctccacctctctctgtctctctatctgtataaatctctctcactcgaactccctcagtctcacactcaatcactgtag

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc