Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtccaccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g00230.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G40510.1 (Glycine max), 5'ss of exon 1
GAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtc-caccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatat
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GAACTTGTGTGTGATTACTTGATGAAGAAGGTGGCACACAATGATTCCCTTCTCATGATAAACGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtgagcaatatagtgcctactctttcccctcatatcatgcattctctaatataaatttaattattgttttatacatacatgacatgtttctcaatttctc-
upper sequence: Vv19s0027g00230.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G18470.1 (Glycine max), 5'ss of exon 1
GAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtc-caccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatat
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GAGCTTGTGTGTGATTACTTGATGAAGAAGGTGCAACACAATGATTCCCTTCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtaagtaatgtagtgcttactctttctcctcatatcatgcattctctaatataaatttaattgttgctttatatgtacatgatgcatctttcttaatttc-
upper sequence: Vv19s0027g00230.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G56010.2 (Arabidopsis thaliana), 5'ss of exon 1
GAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTC--------CTCTGA--ATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtccaccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatat
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---------TGCGATTACTTGATGA-GACGATCGCTTCACAATAATCATCGACCACCTCTTGTCCTGATCCAAGTCGATCTCAACAAGTGTGAGCCTTGGGACATCCCAAgtacgttttcattcattcttgacaacagtatctttattgatccatatatctctgttttactttgatatggttggtccatatagaagattatgtcatgatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713712|gb|FC063743.1|FC063743EST: TCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTG AGATGGCATGTGTTGGGAGCAAAGATTGGTATTTCTACAACCAGAGAGATA
genomic: TCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtccac ... ggtggggcagAGATGGCATGTGTTGGGAGCAAAGATTGGTATTTCTACAACCAGAGAGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtccaccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccctc