Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggccttctttctatctcactctccctttcctttctgattttctctgagcctgtttttagatgtttatttgtgttgattctggattctacgctataa...

Basic information

species Vitis vinifera
transcript Vv19s0015g01190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010747|gb|BQ795781.1|BQ795781
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|28962130|gb|CB341163.1|CB341163
EST:     CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110397347|gb|EC963078.1|EC963078
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGACTAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGAC-AGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCA
EST: gi|110397452|gb|EC963192.1|EC963192
EST:     CTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|18458569|gb|BM436847.1|BM436847
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30304918|gb|CB981712.1|CB981712
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|28966983|gb|CB346016.1|CB346016
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110424378|gb|EC990737.1|EC990737
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110718424|gb|EE095241.1|EE095241
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|27586838|gb|CB009533.1|CB009533
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30325577|gb|CD008839.1|CD008839
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|77579270|gb|DV218463.1|DV218463
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30326464|gb|CD009726.1|CD009726
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110724706|gb|EE100768.1|EE100768
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110716572|gb|EE091681.1|EE091681
EST:     CCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110367321|gb|EC931251.1|EC931251
EST:     CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26261823|gb|CA812886.1|CA812886
EST:     GGGAGT-CGTAACCGAGGAGACTGAGAGGCCAAA-CCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30304847|gb|CB981641.1|CB981641
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|22012426|gb|BQ797460.1|BQ797460
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30303600|gb|CB980394.1|CB980394
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCNANACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATTTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26259369|gb|CA810432.1|CA810432
EST:     CGTAA-CGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30305660|gb|CB982454.1|CB982454
EST:     CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGATAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110398331|gb|EC964618.1|EC964618
EST:     GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110357711|gb|EC921395.1|EC921395
EST:     GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30132272|gb|CB917611.1|CB917611
EST:     GAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26256846|gb|CA807909.1|CA807909
EST:     GGGAGTNCGTAA-CGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71882028|gb|DT031083.1|DT031083
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110425028|gb|EC991403.1|EC991403
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGATAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|22010784|gb|BQ795818.1|BQ795818
EST:     AGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: AGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30125737|gb|CB911076.1|CB911076
EST:     CTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110397772|gb|EC963658.1|EC963658
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|18458592|gb|BM436870.1|BM436870
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|33408306|gb|CF213933.1|CF213933
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110717724|gb|EE093841.1|EE093841
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110363395|gb|EC926978.1|EC926978
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71888938|gb|DT037993.1|DT037993
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30299508|gb|CB976302.1|CB976302
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGTCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110732574|gb|EE107981.1|EE107981
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71881592|gb|DT030647.1|DT030647
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26257517|gb|CA808580.1|CA808580
EST:     GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|27582220|gb|CB004915.1|CB004915
EST:     CTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110379386|gb|EC944575.1|EC944575
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30131459|gb|CB916798.1|CB916798
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26257247|gb|CA808310.1|CA808310
EST:     CCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|33406943|gb|CF212570.1|CF212570
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|34548951|gb|CF517183.1|CF517183
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|33406857|gb|CF212484.1|CF212484
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71890103|gb|DT039158.1|DT039158
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30300456|gb|CB977250.1|CB977250
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|26261501|gb|CA812564.1|CA812564
EST:     GNGAGT-CGTAACCGAGGAGACTGAGAGG-CAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: G-GAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71883658|gb|DT032713.1|DT032713
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|22010748|gb|BQ795782.1|BQ795782
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30299771|gb|CB976565.1|CB976565
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGACACTG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30303661|gb|CB980455.1|CB980455
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71883580|gb|DT032635.1|DT032635
EST:     GCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110411130|gb|EC976832.1|EC976832
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30129132|gb|CB914471.1|CB914471
EST:     TGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: TGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110359545|gb|EC921209.1|EC921209
EST:     CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|29782648|gb|CB348159.2|CB348159
EST:     TAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGATTG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: TAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|32271408|gb|CD720567.1|CD720567
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|22011991|gb|BQ797025.1|BQ797025
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71869064|gb|DT018119.1|DT018119
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30324284|gb|CD007546.1|CD007546
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|29783467|gb|CB349632.2|CB349632
EST:     GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGTCAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30300176|gb|CB976970.1|CB976970
EST:     AGGAGACTGAGAGGCCAAACCCTAGTGAGACACTG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: AGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110402516|gb|EC960316.1|EC960316
EST:     GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|34548858|gb|CF517090.1|CF517090
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|32270308|gb|CD719467.1|CD719467
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110425346|gb|EC991730.1|EC991730
EST:     GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110723131|gb|EE100089.1|EE100089
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|71890767|gb|DT039822.1|DT039822
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110425426|gb|EC991811.1|EC991811
EST:     GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110722789|gb|EE099363.1|EE099363
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110362457|gb|EC925993.1|EC925993
EST:     CCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|32245796|gb|CD711615.1|CD711615
EST:     CTGAGAGGCCAAACCNTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|33404254|gb|CF209881.1|CF209881
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|32270399|gb|CD719558.1|CD719558
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|27581939|gb|CB004634.1|CB004634
EST:     CTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: CTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|30327346|gb|CD010608.1|CD010608
EST:     GAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|29783510|gb|CB349712.2|CB349712
EST:     GGGAGTCCGTACCCGAGGAGACTGAGAGGCCNGATCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
EST: gi|110721366|gb|EE098284.1|EE098284
EST:     GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAG                         CACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA
genomic: GGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggcctt ... attgctgcagCACGAATCCTTCAACTGTATTGAAACTTTGGTCAATCTGTAATGGCTTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGGGAGTCCGTAACCGAGGAGACTGAGAGGCCAAACCCTAGTGAGAGACAGgtggggccttctttctatctcactctccctttcctttctgattttctctgagcctgtttttagatgtttatttgtgttgattctggattctacgctataa

- - - - - - - - - GAGGAG
- - - - - - - - -  AGGAGA
- - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc