1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCTACACTCCTATGGCTCGTTCTCGGCAACAGCAGCTGCTTCAGCCGCCGCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgttgtatcggtcactgtttggttgcagagaaaacggagaaaaggaaagaaaaaaaaatgcaaagtttagttatttggggttttaaccggtgaa...
species | Vitis vinifera |
transcript | Vv19s0015g00180.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|351040993|gb|FQ443769.1|FQ443769
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|161711555|gb|FC059509.1|FC059509
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|351022357|gb|FQ445132.1|FQ445132
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|26258638|gb|CA809701.1|CA809701
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|352791153|gb|FQ477480.1|FQ477480
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGAEST: gi|351025616|gb|FQ426630.1|FQ426630
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
EST: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGG TAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
genomic: GCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgtt ... tatgatgcagTAATGCTGGTATTTCAGTTGCTCAATGTGATGCTGGTGCAACATGGAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTACACTCCTATGGCTCGTTCTCGGCAACAGCAGCTGCTTCAGCCGCCGCGGCTTCCGTGGCCGCTGCGACTCCGTTTGCCTCTAGGTTTTTGTTCGGgtaaagtgttgtatcggtcactgtttggttgcagagaaaacggagaaaaggaaagaaaaaaaaatgcaaagtttagttatttggggttttaaccggtgaa
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