1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATACGGCTTTTTGCAATATTGCCCATGAAGCGAGGGTACACAGAATCTCCATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttcactggaatctccctctgtcgttcattcttttgaagttcttggatgattatttgcttgatttctggattttgggacatgggttttgtggttt...
species | Vitis vinifera |
transcript | Vv19s0014g04740.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351017257|gb|FQ435609.1|FQ435609
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351029176|gb|FQ435376.1|FQ435376
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ACCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACATTTCCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|352786282|gb|FQ478893.1|FQ478893
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|71889110|gb|DT038165.1|DT038165
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|71887602|gb|DT036657.1|DT036657
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349809402|gb|FQ411900.1|FQ411900
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349829213|gb|FQ419745.1|FQ419745
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349814559|gb|FQ399199.1|FQ399199
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351041305|gb|FQ447432.1|FQ447432
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349823220|gb|FQ400199.1|FQ400199
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|71888703|gb|DT037758.1|DT037758
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|71884044|gb|DT033099.1|DT033099
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351046268|gb|FQ442646.1|FQ442646
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349809129|gb|FQ398926.1|FQ398926
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|349824512|gb|FQ413179.1|FQ413179
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|161710854|gb|FC058160.1|FC058160
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351056793|gb|FQ443420.1|FQ443420
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAGEST: gi|351038453|gb|FQ464319.1|FQ464319
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
EST: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAG GTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
genomic: ATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttca ... attgtcttagGTGATTCACAATTTCTAGAGGATGAAAGCACAAAGAATTTTGCCCGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACGGCTTTTTGCAATATTGCCCATGAAGCGAGGGTACACAGAATCTCCATCAACCTCTCTTGGTCCACCGCATTCCAGATTCAGACACAACCCAGAAGgtgaatttcactggaatctccctctgtcgttcattcttttgaagttcttggatgattatttgcttgatttctggattttgggacatgggttttgtggttt
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