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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGCAGTATCTCTGCCGGAAAGTGGCCGGACAGGGGTTTTCATTGGAGATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAgtgagtattgattcgaaaacctgcgttttctgcttcaatttggatttgtttctgatcatttatttacttgttctgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g03290.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03290.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G35000.1 (Glycine max), 5'ss of exon 1
CTGGTGCAGTATCTCTGCCGGAAAGTGGCCGGACAGGGGTTTTCATTGGAGATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAgtgagt------attgattcgaaaacctgcgttttctgcttcaatttg------gatttgtttctgatc--atttatttacttg------ttctgcag
|| || |||||||| ||||| || || || || ||    || ||  |    || ||||  ||||| ||| |||||||||| ||||||||||||||||| ||| | |      | | | ||    | || | |||  |  || ||  ||        ||||||    ||   ||  ||||  |||      || |||||
CTCGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaacccactcactcacccatctccatttatttttttaaaatgttaattactttgttctgaattgaataaatttgattgattaatttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715700|gb|FC067804.1|FC067804
EST:     GATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCA                         GTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATC
genomic: GATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAgtgagtattg ... tgttctgcagGTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATC
EST: gi|30129808|gb|CB915147.1|CB915147
EST:     GATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCA                         GTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATC
genomic: GATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAgtgagtattg ... tgttctgcagGTAAAGCTATATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCCAGAGATC