Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTCCAGTTGGAAATTGTTTGAGGGGCTCTTCAGTTTGGTGGACATGGCTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctgctttcttctctcatttggagtttctttctttctttttcttgctttttcttgtttttctcatcaaatgtgcacgtcgggttgattctcttttgggaattgcttgtgggtttttgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g03160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825166|gb|FQ415713.1|FQ415713
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351014316|gb|FQ437318.1|FQ437318
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|161708278|gb|FC057463.1|FC057463
EST:     TATGCAAGCTGCTTGCTTGGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACT
genomic: TATGCAAGCTGC-TGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGA-Ggtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACT
EST: gi|71869221|gb|DT018276.1|DT018276
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351014319|gb|FQ437321.1|FQ437321
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349825165|gb|FQ415712.1|FQ415712
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349828186|gb|FQ415514.1|FQ415514
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351043250|gb|FQ443971.1|FQ443971
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349825101|gb|FQ415648.1|FQ415648
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349823391|gb|FQ402590.1|FQ402590
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351012575|gb|FQ430139.1|FQ430139
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|37188642|gb|CF607991.1|CF607991
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|110731615|gb|EE106182.1|EE106182
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351042481|gb|FQ429241.1|FQ429241
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349832270|gb|FQ420831.1|FQ420831
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351048774|gb|FQ449642.1|FQ449642
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351033062|gb|FQ446415.1|FQ446415
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349807157|gb|FQ401148.1|FQ401148
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|18458841|gb|BM437119.1|BM437119
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|110693994|gb|EE070714.1|EE070714
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|71874159|gb|DT023214.1|DT023214
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349828187|gb|FQ415515.1|FQ415515
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351028641|gb|FQ446314.1|FQ446314
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|77580174|gb|DV218989.1|DV218989
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|71869540|gb|DT018595.1|DT018595
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCCCGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|110693068|gb|EE068976.1|EE068976
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349829235|gb|FQ419767.1|FQ419767
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCGCTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|349827196|gb|FQ421469.1|FQ421469
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351022959|gb|FQ428868.1|FQ428868
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|351024442|gb|FQ426251.1|FQ426251
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: gi|110700041|gb|EE077629.1|EE077629
EST:     CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG                         GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACTCCAGTTGGAAATTGTTTGAGGGGCTCTTCAGTTTGGTGGACATGGCTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctgctttcttctctcatttggagtttctttctttctttttcttgctttttcttgtttttctcatcaaatgtgcacgtcgggttgattctcttttgggaattgcttgtgggtttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG