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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCTCCCTTCACCCTCGCTTATGACATTGCTGGTTCTGCTCCTCGCGGCTTTGGCATCCCCGAGTTCATTTCCAAACTCTCTTTCTCCGCCATCTTCgtaagctatcatctaatgaatgacccaatatgcatttgtatgttttgtgtgaatgtgtgaatgtgttttctcgttggtgcttgtaatctggtgaagtggg...

Basic information

species Vitis vinifera
transcript Vv19s0014g02470.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G35400.1 (Glycine max), 5'ss of exon 1
TCTCTCTCCCTTCACCCTCGCTTATGACATTGCTGGTTCTGCTCCTCGCGGCTTTGGCATCCCCGAGTTCATTTCCAAACTCTCTTTCTCCGCCATCTTCgtaag-ctatcatctaatgaatgacccaatatgcatttgtatgttttgtgtg-aatgtgtgaatgtgttttctcgttggtgcttgtaatctggtgaagtggg
  | ||||| ||||| ||||| |  |||||||| || ||||||||||||||||| ||| |||||||  |||| ||||| |||||     || || ||||||| || |  |  ||   |      |    | |    |       |||  ||  ||| | |   | | |||| | |||  |   | |       | |  |   
CTTGTCTCCTTTCACTCTCGCCTTCGACATTGCCGGCTCTGCTCCTCGCGGCTTCGGCGTCCCCGAACTCATCTCCAAGCTCTCCGCTACCTCCGTCTTCgtcagtcccttctccccttttctgctatttttcttctcactcacttttcgttcaatttctctgt-tatttttttgttattcaatttccctctctaatttct-

upper sequence: Vv19s0014g02470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G35110.1 (Glycine max), 5'ss of exon 1
TCTCTCTCCCTTCACCCTCGCTTATGACATTGCTGGTTCTGCTCCTCGCGGCTTTGGCATCCCCGAGTTCATTTCCAAACTCTCTTTCTCCGCCATCTTCgtaag-ctatcatctaatgaatgacccaatatgcatttgtatgttttgtgtgaatgtgtgaatgtgttttctcgttggtgcttgtaatctggtgaagtggg---
  | ||||||||||| ||||| |  || ||||| || ||||||||||||||||| ||| |||| ||  |||| ||||| ||||||  | |  || ||||||| || |  |  ||   |   |   |  |    | |||  |||   | | |   | | |   | |||| | |  ||| |  |     |||||  |  || |   
CTTGTCTCCCTTCACTCTCGCCTTCGATATTGCAGGCTCTGCTCCTCGCGGCTTCGGCGTCCCGGAACTCATCTCCAAGCTCTCTGCCACTTCCGTCTTCgtcagtcccttttcccctttttcttctcactcactttt-catgcaatttctctgttttt---tctgttatttttttgttattcaatttctgggtatttgaggaa