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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccatttttgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g02320.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttt---tcctgatattttctcaaacgggtatct-tccatttttgcag
|||| || |  ||||||||||| || || || |||||  | |  ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||| | ||  |  |    ||   || |   |   || ||| ||||||  |      || || |  ||||       ||| | |   |  | | ||
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgtaccacttaa----ttaattaccacccctcctatgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttc-catttttgcag
|||| || |  ||||||||||| || || || |||||  | |  ||||| ||| |||| |||||||| ||||| || |||||||||||||||||||||||||||||| | | |    | |  |   | |   || ||||        |  | | ||      |    |||    | || |||        |||||
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctag-----ctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccatttttgcag--------------------------------------------------------------------------------------------------------
|||| || |  ||||||||||| || || || |||||  | |  ||||| |||| ||| |||||||| ||||| || |||||||||||||||||||||||||||||      | |  | |  | ||  | | || ||| |         |  |   ||  |   | ||   |  | || ||    | |||||                                                                                                          
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCAGCTCGGACTGGACGTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgatgtgtgcctctccctgtccttat-tccgtccggacaccgacgaatgaactcgtccgtcctactatagctagctattgtctttgctcttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatg-----tctccctttc-tacactttttctatctatctgtctgtgattttttggtttt----cctgatatttt--ctcaaacgggtatct-tccattt-ttgcag
||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||       || ||||| | | ||| |||| ||| ||||||| |   | | |   ||     | | |  | ||  |||||  |||| | | ||||||| |  |||
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatg-----tctccctttctacactttttctat-ctat----------ctgtctgtgatttttt--ggttttcctgatattttctcaaacgggtatcttccatttt-------tgcag
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||     |||| || |||     |||| |||  |||          || ||  || | ||||  |   ||  |  | ||||||||   |||| |  ||||||||       |||||
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttcta-cactttttctatctatctg--------------tctgtgattttttgg-------ttttcctgatatttt-ctcaaacgggtatcttccatttttgcag---
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||  || || |||  | || | ||| ||| ||||              | |||| |  ||||        ||||   | | |||| |||||  |||| |  |||||||||   |   
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttctctctctctctctctctctctctttctgcgtggttgtgtgtatatgtgctactttgaatggtgttttttgaggtgtttttctcaactgggtcttctccattttttttgcag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G35490.1 (Glycine max), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgat---------tttttggttttcctgata-ttttctcaaacgggtatcttccatttttgcag----------------------------------------------------------------------------
||||||| |||||||||||||||||||||||  |||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||    |  | || | |||||| | |  ||| ||      |         | |  ||   | |  | | | || |||| |   |    |  | |  |   |                                                                            
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGACCCTCAGAAGAGTCTGTCTCAACTCAGAATGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgctatctatacttctcttttttttttaatccgtaaaaattgaagaccggtatcaggcaatacccacactcttttcaaccaattgagctatagtcctttggtctctctttctgtttcttaactctaacttcaaccaataacctcttacctcaactgggtcttgtccatttcatacag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccatttttgcag
|||| || || || |||||||| |||||||| || |||||||| |||||| | ||||| ||||||| ||||||||| ||||||||||| ||||| || |||||       || |||   || | | | ||| |||||   | | | |||   | |     ||  || |  |      |  |||   |||     
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacacacttctctct---ctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag--

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccat-ttttgcag
|||||||  | |||||| |||| || || |||||||| |||| ||| ||||||||| | ||||||||||||||||| |||||| |||||||||| || ||||| || || || ||  ||  |  ||| | | | | |   |||  |   | | |  || || | | ||||||  | | ||||   | || | |||
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacat---gatctatct-atctctcctcaaaacgatgtcttttttgttcttcag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgt-----ctcccttt---ctacactttttctatctatctgtctgt-gattttttggttttcct-gatattttctcaaacgggtatcttccatttttgcag---------------------
  ||||   | |   | ||||| || || || || ||  | | ||| ||| ||| |||||| |||||||||||||| ||||||||||||||||| || ||||| |      ||| | ||   |  |  | | ||| ||  ||| ||| | | | | |   || |||| | | |||      |  | ||  || | |  |   |                      
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagcccccttctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatg------tctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccatttttgcag-------------
  ||||   | |   | ||||| || || || || ||  | | ||| ||| ||| |||||| |||||||||||||| ||||||||||||||||| || ||||| |          ||||    | | || ||| ||| ||| ||| |  | |  | ||| |     |   ||   |    | |  ||   |||  |   |             
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgccttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719944|gb|FC068689.1|FC068689
EST:     CTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCC                         AAGAGTTAGAGGAGGTAATGGGTGCAAGGTTGGAGATGACAACGGCAGCTT
genomic: CTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctcc ... atttttgcagAAGAGTTAGAGGAGGTAATGGGTGCAAGGTTGGAGATGACAACGGCAGCTT